Browse Element(s) Details


Os.2821.1.A1_s_at

Description gb:AF324485.1
DB_XREF= gi:12963337
TID=Os.2821.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2821 (NCBI UniGene Cluster)
DEF=Oryza sativa aminotransferase-like protein mRNA, complete cds.
PROD=aminotransferase-like protein
FL= gb:AF324485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0221011/11aminotransferase, class III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02170Os.49093.1.S1_a_at11/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.1.S1_at10/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.2.S1_x_at8/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02180NANA2+659690..660670hypothetical protein
LOC_Os02g02190Os.49093.1.S1_a_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02190Os.49093.2.S1_x_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02200OsAffx.28270.5.S1_x_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02200OsAffx.28270.5.S1_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02210Os.2821.1.A1_s_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.2821.1.A1_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.2.S1_x_at8/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.3.S1_x_at7/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.38172.1.S1_x_at2/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_x_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02219NANA2+698138..698327NA
LOC_Os02g02230OsAffx.24063.1.S1_at11/112+708712..715746Cytochrome P450 51, putative, expressed
LOC_Os02g02240Os.4816.1.S1_at6/112+717857..719511expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2821.1.A1_s_at--302--2091Chr02:682672..682696 (25 bp)
ACATATTCTGGCCATCCTGTTTCCT
LOC_Os02g02210
Os.2821.1.A1_s_at--261--9131Chr02:682646..682670 (25 bp)
TGCTGTTGCTTTAGAGGCGCTGAAA
LOC_Os02g02210
Os.2821.1.A1_s_at--1144--6511Chr02:682508..682532 (25 bp)
GATATTCCTGGTCATGTCACACATG
LOC_Os02g02210
Os.2821.1.A1_s_at--68--2091Chr02:682488..682512 (25 bp)
ACATGTTGCTCAAAGGTTCCAGGAG
LOC_Os02g02210
Os.2821.1.A1_s_at--221--8211Chr02:682463..682487 (25 bp)
GGAATCAAGGCCTTTGCAGCTGGAA
LOC_Os02g02210
Os.2821.1.A1_s_at--662--8431Chr02:682455..682479 (25 bp)
GGCCTTTGCAGCTGGAAGTCCAATT
LOC_Os02g02210
Os.2821.1.A1_s_at--926--5631Chr02:682296..682320 (25 bp)
GACACGTGGTGTAGGATTGCTGATA
LOC_Os02g02210
Os.2821.1.A1_s_at--177--4331Chr02:682244..682268 (25 bp)
CCATATGAGTTATTCCCTTTTGAGT
LOC_Os02g02210
Os.2821.1.A1_s_at--698--8151Chr02:679807..679831 (25 bp)
GGAAACTTGATAGCGATGTCCCCAC
LOC_Os02g02210
Os.2821.1.A1_s_at--194--6271Chr02:679793..679817 (25 bp)
GATGTCCCCACCACTGATAATAACC
LOC_Os02g02210
Os.2821.1.A1_s_at--237--271Chr02:679636..679660 (25 bp)
ATATGGAGAAGCTCTGAAGGCAACA
LOC_Os02g02210
Target Sequence 
ACATATTCTGGCCATCCTGTTTCCTGTGCTGTTGCTTTAGAGGCGCTGAAAATTTATCGGGAAAGAGATATTCCTGGTCA
TGTCACACATGTTGCTCAAAGGTTCCAGGAGGGAATCAAGGCCTTTGCAGCTGGAAGTCCAATTGTTGGGGAGACACGTG
GTGTAGGATTGCTGATAGCAACTGAGTTCNCCGATAACAAATCNCCATATGAGTTATTCCCTTTTGAGTGGGGTGTTGGT
GAAATATTTGGACAGGAGTGTAAGAAACGTGGCATGATGGTTAAGGTTCTTGGAAACTTGATAGCGATGTCCCCACCACT
GATAATAACCCGTGAAGAAATTGATAAACTGGTGAGCATATATGGAGAAGCTCTGAAGGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2821.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis