Browse Element(s) Details


OsAffx.28270.5.S1_at

Description tigr:9630.m00121
TID=OsAffx.28270.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0220011/11pathogenesis-related thaumatin family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02170Os.49093.1.S1_a_at11/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.1.S1_at10/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.2.S1_x_at8/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02180NANA2+659690..660670hypothetical protein
LOC_Os02g02190Os.49093.1.S1_a_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02190Os.49093.2.S1_x_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02200OsAffx.28270.5.S1_x_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02200OsAffx.28270.5.S1_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02210Os.2821.1.A1_s_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.2821.1.A1_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.2.S1_x_at8/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.3.S1_x_at7/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.38172.1.S1_x_at2/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_x_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02219NANA2+698138..698327NA

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28270.5.S1_at--1041--7711Chr02:677244..677268 (25 bp)
GGGTGGCGGCTTCGAGCTGTCGCTC
LOC_Os02g02200
OsAffx.28270.5.S1_at--611--4911Chr02:677252..677276 (25 bp)
GCTTCGAGCTGTCGCTCGGTGCCAA
LOC_Os02g02200
OsAffx.28270.5.S1_at--645--10631Chr02:677254..677278 (25 bp)
TTCGAGCTGTCGCTCGGTGCCAATG
LOC_Os02g02200
OsAffx.28270.5.S1_at--1047--4071Chr02:677256..677280 (25 bp)
CGAGCTGTCGCTCGGTGCCAATGTC
LOC_Os02g02200
OsAffx.28270.5.S1_at--79--1611Chr02:677258..677282 (25 bp)
AGCTGTCGCTCGGTGCCAATGTCTC
LOC_Os02g02200
OsAffx.28270.5.S1_at--1151--3871Chr02:677260..677284 (25 bp)
CTGTCGCTCGGTGCCAATGTCTCGT
LOC_Os02g02200
OsAffx.28270.5.S1_at--514--7231Chr02:677262..677286 (25 bp)
GTCGCTCGGTGCCAATGTCTCGTTC
LOC_Os02g02200
OsAffx.28270.5.S1_at--13--4811Chr02:677265..677289 (25 bp)
GCTCGGTGCCAATGTCTCGTTCCCA
LOC_Os02g02200
OsAffx.28270.5.S1_at--647--9431Chr02:677267..677291 (25 bp)
TCGGTGCCAATGTCTCGTTCCCAGC
LOC_Os02g02200
OsAffx.28270.5.S1_at--118--4292Chr02:677646..677670 (25 bp)
CCTCCCGCTGGCTGAGTCAGAGAAG
LOC_Os02g02200
OsAffx.28270.5.S1_at--115--3812Chr02:677647..677671 (25 bp)
CTCCCGCTGGCTGAGTCAGAGAAGG
LOC_Os02g02200
Target Sequence 
GGGTGGCGGCTTCGAGCTGTCGCTCGGTGCCAATGTCTCGTTCCCAGCCCCGGATGGTTGGTCCGGCCGCTTGTGGGCGC
GCACGGACTGTGCACCCTCCGGCACCGCGTCCCTCGCCTGTGCCACGGGGGACTTCGGCGGCGTTGTGAGCTGCTCCCTC
GGTGGCGCGCCGCCCGTCACCCTCGCCGAGTTCACGCTGGGCAGTGCCGACGGGAAGGACTTGTACGACGTGAGCCTCGT
GGGCAGGGGCAGACGGGGGAGCCCGCGCGCCACTCCTCCCCCCGCCGCCCGCGCGCTGCTCCTCGCCGCCCACCCGCAGC
TTCTCCCCCCACCACCGCTGCGTCGCCCGCCGCCGCCATCACCGCCGCCGCGTCGCCCCTCACCGGCCGCTGACGCCCTC
CTCCTCCCGCTGGCTGAGTCAGAGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28270.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis