Browse Element(s) Details

Os.49093.1.S1_at

Description

gb:AB008519.1
DB_XREF= gi:3641660
GEN=Nrt2
TID=Os.49093.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49093 (NCBI UniGene Cluster)
DEF=Oryza sativa Nrt2 mRNA for high affinity nitrate transporter, complete cds.
PROD=high affinity nitrate transporter
FL= gb:AB008519.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g02170	10/11	High affinity nitrate transporter, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g02120	Os.27382.2.S1_at	11/11	2	+	627685..630534	wall-associated kinase 3, putative, expressed
LOC_Os02g02130	Os.38814.1.S1_at	7/11	2	+	633642..635608	60S ribosomal protein L37, putative
LOC_Os02g02130	Os.50740.1.S1_x_at	4/11	2	+	633642..635608	60S ribosomal protein L37, putative
LOC_Os02g02130	Os.50728.1.S1_x_at	3/11	2	+	633642..635608	60S ribosomal protein L37, putative
LOC_Os02g02130	Os.50740.1.S1_at	2/11	2	+	633642..635608	60S ribosomal protein L37, putative
LOC_Os02g02130	Os.50741.1.S1_at	2/11	2	+	633642..635608	60S ribosomal protein L37, putative
LOC_Os02g02130	Os.50727.1.S1_x_at	1/11	2	+	633642..635608	60S ribosomal protein L37, putative
LOC_Os02g02140	Os.50672.1.S2_x_at	11/11	2	+	637013..640452	Leucine Rich Repeat family protein, expressed
LOC_Os02g02140	Os.50672.1.S2_at	11/11	2	+	637013..640452	Leucine Rich Repeat family protein, expressed
LOC_Os02g02140	Os.50672.1.S1_at	11/11	2	+	637013..640452	Leucine Rich Repeat family protein, expressed
LOC_Os02g02140	Os.50672.1.S1_x_at	11/11	2	+	637013..640452	Leucine Rich Repeat family protein, expressed
LOC_Os02g02150	Os.49918.1.S1_at	11/11	2	+	646112..649305	DEAD/DEAH box helicase family protein, expressed
LOC_Os02g02160	OsAffx.24060.1.S1_at	11/11	2	+	650534..651349	expressed protein
LOC_Os02g02170	Os.49093.1.S1_a_at	11/11	2	+	655324..657243	High affinity nitrate transporter, putative, expressed
LOC_Os02g02170	Os.49093.1.S1_at	10/11	2	+	655324..657243	High affinity nitrate transporter, putative, expressed
LOC_Os02g02170	Os.49093.2.S1_x_at	8/11	2	+	655324..657243	High affinity nitrate transporter, putative, expressed
LOC_Os02g02180	NA	NA	2	+	659690..660670	hypothetical protein
LOC_Os02g02190	Os.49093.1.S1_a_at	11/11	2	+	667264..669053	High affinity nitrate transporter, putative, expressed
LOC_Os02g02190	Os.49093.2.S1_x_at	11/11	2	+	667264..669053	High affinity nitrate transporter, putative, expressed
LOC_Os02g02200	OsAffx.28270.5.S1_x_at	11/11	2	+	676466..677742	pathogenesis-related thaumatin family protein, putative
LOC_Os02g02200	OsAffx.28270.5.S1_at	11/11	2	+	676466..677742	pathogenesis-related thaumatin family protein, putative
LOC_Os02g02210	Os.2821.1.A1_s_at	11/11	2	+	679452..697350	aminotransferase, class III family protein, expressed
LOC_Os02g02210	Os.2821.1.A1_at	11/11	2	+	679452..697350	aminotransferase, class III family protein, expressed
LOC_Os02g02210	OsAffx.21870.2.S1_x_at	8/11	2	+	679452..697350	aminotransferase, class III family protein, expressed
LOC_Os02g02210	OsAffx.21870.3.S1_x_at	7/11	2	+	679452..697350	aminotransferase, class III family protein, expressed
LOC_Os02g02210	Os.38172.1.S1_x_at	2/11	2	+	679452..697350	aminotransferase, class III family protein, expressed
LOC_Os02g02210	OsAffx.29532.2.S1_x_at	1/11	2	+	679452..697350	aminotransferase, class III family protein, expressed
LOC_Os02g02210	OsAffx.29532.2.S1_at	1/11	2	+	679452..697350	aminotransferase, class III family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0015706	biological_process	nitrate transport
GO:0048527	biological_process	lateral root development
GO:0016020	cellular_component	membrane
GO:0015112	molecular_function	nitrate transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49093.1.S1_at--1133--293	1	Chr02:657020..657044 (25 bp)	AAGGCGTAAACAATTCTGCGACCGA	LOC_Os02g02170
Os.49093.1.S1_at--500--315	1	Chr02:657031..657055 (25 bp)	AATTCTGCGACCGAGACCAGCAATA	LOC_Os02g02170
Os.49093.1.S1_at--584--147	1	Chr02:657049..657073 (25 bp)	AGCAATACGCTGGAGTTCGACTCGA	LOC_Os02g02170
Os.49093.1.S1_at--681--671	1	Chr02:657063..657087 (25 bp)	GTTCGACTCGATGATAACACGCCGG	LOC_Os02g02170
Os.49093.1.S1_at--161--939	1	Chr02:657070..657094 (25 bp)	TCGATGATAACACGCCGGAGCACGT	LOC_Os02g02170
Os.49093.1.S1_at--548--801	1	Chr02:657086..657110 (25 bp)	GGAGCACGTCCTTGTTGCAAACGGT	LOC_Os02g02170
Os.49093.1.S1_at--235--727	1	Chr02:657093..657117 (25 bp)	GTCCTTGTTGCAAACGGTGATGAAA	LOC_Os02g02170
Os.49093.1.S1_at--216--525	3	Chr02:657146..657170 (25 bp)	GAATCCTTTGAAATTAATTCCTTTG	LOC_Os02g02170
Os.49093.1.S1_at--516--925	1	Chr02:657164..657188 (25 bp)	TCCTTTGGAATTTCTCCGATACAAA	LOC_Os02g02170
Os.49093.1.S1_at--1076--601	1	Chr02:657205..657229 (25 bp)	GAGAGGCATTTATACCTATGTACAT	LOC_Os02g02170
Os.49093.1.S1_at--269--873	1	Chr02:657223..657245 (23 bp)	TGTACATGTTACACTTTTTTGAAAA	NONE

Target Sequence

AAGGCGTAAACAATTCTGCGACCGAGACCAGCAATACGCTGGAGTTCGACTCGATGATAACACGCCGGAGCACGTCCTTG
TTGCAAACGGTGATGAAATTAAGAGTGAAATATTTCCTTAGGAATTGAATCCTTTGAAATTAATTCCTTTGGAATTTCTC
CGATACAAACGGAGGTATAATAAGGGAGAGGCATTTATACCTATGTACATGTTACACTTTTTTGAAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis