Browse Element(s) Details


OsAffx.24060.1.S1_at

Description tigr:9630.m00117
TID=OsAffx.24060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0216011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02110Os.27016.3.S1_x_at4/112+623174..626119dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase, putative
LOC_Os02g02120Os.27382.2.S1_at11/112+627685..630534wall-associated kinase 3, putative, expressed
LOC_Os02g02130Os.38814.1.S1_at7/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50740.1.S1_x_at4/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50728.1.S1_x_at3/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50740.1.S1_at2/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50741.1.S1_at2/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02130Os.50727.1.S1_x_at1/112+633642..63560860S ribosomal protein L37, putative
LOC_Os02g02140Os.50672.1.S2_x_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S2_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S1_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02140Os.50672.1.S1_x_at11/112+637013..640452Leucine Rich Repeat family protein, expressed
LOC_Os02g02150Os.49918.1.S1_at11/112+646112..649305DEAD/DEAH box helicase family protein, expressed
LOC_Os02g02160OsAffx.24060.1.S1_at11/112+650534..651349expressed protein
LOC_Os02g02170Os.49093.1.S1_a_at11/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.1.S1_at10/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.2.S1_x_at8/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02180NANA2+659690..660670hypothetical protein
LOC_Os02g02190Os.49093.1.S1_a_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02190Os.49093.2.S1_x_at11/112+667264..669053High affinity nitrate transporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24060.1.S1_at--1127--1331Chr02:651292..651316 (25 bp)
AGAGTGCTACCCATCATCGACGAGG
LOC_Os02g02160
OsAffx.24060.1.S1_at--166--5791Chr02:651220..651244 (25 bp)
GACGACCGCCGGAAGGCCATCGTGT
LOC_Os02g02160
OsAffx.24060.1.S1_at--659--3951Chr02:651211..651235 (25 bp)
CGGAAGGCCATCGTGTCCAGGATGA
LOC_Os02g02160
OsAffx.24060.1.S1_at--20--4372Chr06:7193470..7193650 (25 bp)
CCACCGTGCTTGTCAGTGCCAAGAA
NONE
OsAffx.24060.1.S1_at--935--1551Chr02:650866..650890 (25 bp)
AGCTTCAGCTGGGACATCGCCACAG
LOC_Os02g02160
OsAffx.24060.1.S1_at--167--8351Chr02:650798..650822 (25 bp)
GGCGGCGCTGCGTCAGTTCTCACCG
LOC_Os02g02160
OsAffx.24060.1.S1_at--433--1851Chr02:650764..650788 (25 bp)
ACGAAGCACGGCATGAGGCTCCGGC
LOC_Os02g02160
OsAffx.24060.1.S1_at--953--7811Chr02:650727..650751 (25 bp)
GGTCAGCAGCTGACGATGACAGGAT
LOC_Os02g02160
OsAffx.24060.1.S1_at--98--2131Chr02:650709..650733 (25 bp)
ACAGGATGAGCAGCATGTCGTGCAG
LOC_Os02g02160
OsAffx.24060.1.S1_at--481--3511Chr02:650696..650720 (25 bp)
CATGTCGTGCAGTGGCAGCCCGGAT
LOC_Os02g02160
OsAffx.24060.1.S1_at--469--5011Chr02:650649..650673 (25 bp)
GCAGGCTGTGTCAGTGGATCACCAC
LOC_Os02g02160
Target Sequence 
AGAGTGCTACCCATCATCGACGAGGAGTCGGAGTCGGAAATGGACGAGGGGTCGCCGGAGAGGAAGGTCGTCGACGACCG
CCGGAAGGCCATCGTGTCCAGGATGAGGGAGCTGCTCCGGCGAGCGGCCGCTCAGTCGTCGGCGCAGTCCAAGCTCCGGT
CCACCGTGCTTGTCAGTGCCAAGAAATGGAAGAGGGTGGTGGTGAGCCTGCAGAACAGCAGGAGGAAGCAGGAGCAGCAG
CAGCAGCAACTGACGACGACGAGCCGGCAGAGCGACGGCGGCATGAGCTCGTCGCCGGTCTCCAGCAAGAGCGACAGCTT
CAGCTGGGACATCGCCACAGCAGAGAGCTGCTCGTCCTCGCCAGCGCAGTCGCCGCTGTGGCCGGCGGCGCTGCGTCAGT
TCTCACCGTCGCCGGCGACGAAGCACGGCATGAGGCTCCGGCGAGACAGCTCGGGGTCAGCAGCTGACGATGACAGGATG
AGCAGCATGTCGTGCAGTGGCAGCCCGGATGACGACGACTATGGCGGCAGCAGCAGGCTGTGTCAGTGGATCACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis