Browse Element(s) Details


OsAffx.12003.2.S1_at

Description tigr:9630.m01120
TID=OsAffx.12003.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1234011/11hypothetical protein
LOC_Os02g124501/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12290OsAffx.2584.1.S1_at11/112+6397342..6399236Nuclear ribonuclease Z, putative
LOC_Os02g12300Os.53956.1.S1_at11/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12300OsAffx.18481.1.S1_x_at1/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12310Os.39041.1.S1_s_at11/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12310Os.10944.1.S1_at10/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12320NANA2+6406853..6415392retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g12330OsAffx.12000.1.S1_at11/112+6418378..6419378hypothetical protein
LOC_Os02g12330OsAffx.12000.1.S1_x_at10/112+6418378..6419378hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.2.S1_s_at11/112+6422491..6424004hypothetical protein
LOC_Os02g12340OsAffx.12003.1.S1_at9/112+6422491..6424004hypothetical protein
LOC_Os02g12350Os.20204.2.S1_a_at11/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_s_at10/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.20204.1.S1_x_at3/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12350Os.28463.1.S1_x_at1/112+6424581..6430587histone deacetylase, putative, expressed
LOC_Os02g12360Os.53409.1.A1_at11/112+6433220..6441415nuclear protein ZAP, putative, expressed
LOC_Os02g12370Os.53540.1.S1_at11/112+6443131..6445361expressed protein
LOC_Os02g12380Os.20204.1.S1_at11/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.3.S1_a_at11/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.1.S1_s_at10/112+6447083..6453145histone deacetylase, putative, expressed
LOC_Os02g12380Os.20204.1.S1_x_at10/112+6447083..6453145histone deacetylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12003.2.S1_at--163--4791Chr02:6423937..6423961 (25 bp)
GCTCCGACAATGTGGCGGTGCTCCT
LOC_Os02g12340
OsAffx.12003.2.S1_at--101--3811Chr02:6423936..6423960 (25 bp)
CTCCGACAATGTGGCGGTGCTCCTG
LOC_Os02g12340
OsAffx.12003.2.S1_at--335--8211Chr02:6423900..6423924 (25 bp)
GGCAAGGCCGCGTAAGGCGGCGACT
LOC_Os02g12340
OsAffx.12003.2.S1_at--440--9751Chr02:6423888..6423912 (25 bp)
TAAGGCGGCGACTGGCCAGGAAGGA
LOC_Os02g12340
OsAffx.12003.2.S1_at--811--7591Chr02:6423860..6423884 (25 bp)
GGGCAGTGGCATCTGAACCATTCCT
LOC_Os02g12340
OsAffx.12003.2.S1_at--858--1091Chr02:6423856..6423880 (25 bp)
AGTGGCATCTGAACCATTCCTGCTT
LOC_Os02g12340
OsAffx.12003.2.S1_at--1083--8271Chr02:6423853..6423877 (25 bp)
GGCATCTGAACCATTCCTGCTTGAT
LOC_Os02g12340
OsAffx.12003.2.S1_at--1022--471Chr02:6423850..6423874 (25 bp)
ATCTGAACCATTCCTGCTTGATCCA
LOC_Os02g12340
OsAffx.12003.2.S1_at--346--3851Chr02:6423848..6423872 (25 bp)
CTGAACCATTCCTGCTTGATCCAAC
LOC_Os02g12340
OsAffx.12003.2.S1_at--1079--252Chr02:6494488..6494938 (25 bp)
ATATGCTGCTCCAGACCAACACTTA
LOC_Os02g12450
OsAffx.12003.2.S1_at--317--3571Chr02:6422532..6422556 (25 bp)
CATATCGGAGATGCTTTGAAAGAGT
LOC_Os02g12340
Target Sequence 
GCTCCGACAATGTGGCGGTGCTCCTGGCTGGACTTCCGGCAAGGCCGCGTAAGGCGGCGACTGGCCAGGAAGGATTGGGG
CAGTGGCATCTGAACCATTCCTGCTTGATCCAACGGCGGCCATTGCCAATTATTCACTGTGATCTCAAGCCAAGCAATAT
TTTCCTAGATAGTGAAATGGTTGCTCACGTTGGTGATTTTGGGCTTGCAAGAGTCCTGCATCAAGACCATAGTGACATGT
TAGAGAAATCAAGTGGCTGGGCTACAATGAGAGGAATGGATATGCTGCTCCAGACCAACACTTACTATCAGAGAACAATG
ATGGAGAAGAAAGAAACTCAGATGGCAAAAGAAAGAGACACGAGAATAGCCTGCATCATATCAATTCTGCAGATTGGAGT
TTCCTGCTCAAAGGAATCTCCAGCAGATCGCATGCATATCGGAGATGCTTTGAAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12003.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis