Browse Element(s) Details


OsAffx.12009.1.S1_at

Description tigr:9630.m01157
TID=OsAffx.12009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF361609 At1g27760T22C5_5, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1272011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12680Os.18933.1.S1_at5/112+6628383..6630103Cytochrome P450 74A3, putative, expressed
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein
LOC_Os02g12710NANA2+6648410..6649777hypothetical protein
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12009.1.S1_at--853--431Chr02:6651958..6651982 (25 bp)
ATCTTCCGGCAGATCGAAATCTTCT
LOC_Os02g12720
OsAffx.12009.1.S1_at--420--10651Chr02:6651955..6651979 (25 bp)
TTCCGGCAGATCGAAATCTTCTTGG
LOC_Os02g12720
OsAffx.12009.1.S1_at--808--8251Chr02:6651951..6651975 (25 bp)
GGCAGATCGAAATCTTCTTGGACGA
LOC_Os02g12720
OsAffx.12009.1.S1_at--902--3431Chr02:6651949..6651973 (25 bp)
CAGATCGAAATCTTCTTGGACGACG
LOC_Os02g12720
OsAffx.12009.1.S1_at--212--2871Chr02:6651871..6651895 (25 bp)
AAGGTGACAACATGGACGAAGCTCC
LOC_Os02g12720
OsAffx.12009.1.S1_at--32--5631Chr02:6651866..6651890 (25 bp)
GACAACATGGACGAAGCTCCTCCAG
LOC_Os02g12720
OsAffx.12009.1.S1_at--726--8091Chr02:6651858..6651882 (25 bp)
GGACGAAGCTCCTCCAGCTCAACTT
LOC_Os02g12720
OsAffx.12009.1.S1_at--1142--8771Chr02:6651780..6651804 (25 bp)
TGTTCGGCGAGACGTTCGAGGTCGA
LOC_Os02g12720
OsAffx.12009.1.S1_at--222--8031Chr02:6651672..6651696 (25 bp)
GGAGGTGCCGCGAAGCCGTGTGGAA
LOC_Os02g12720
OsAffx.12009.1.S1_at--1129--951Chr02:6651618..6651642 (25 bp)
AGGAGCCCGAGAGAGGCACGACGGC
LOC_Os02g12720
OsAffx.12009.1.S1_at--138--1331Chr02:6651607..6651631 (25 bp)
AGAGGCACGACGGCGCTCATGCTGC
LOC_Os02g12720
Target Sequence 
ATCTTCCGGCAGATCGAAATCTTCTTGGACGACGGCGAGGCCCCGACGAAGTCGGTGAGGACGTCGTCGAGCAGGCAGAG
CGTGCTCAAGGTGACAACATGGACGAAGCTCCTCCAGCTCAACTTCCTCACCCGGTACCTCGGCAATGGCTTCCACAGCC
ACCTCCAGCACAACCCGCTGTTCGGCGAGACGTTCGAGGTCGACGGCGACGAGGTGGAGGGGCTACCGGCGGCGAGGAAG
ATGATGAGCAGGAAGCAGAGGGAGAAGAAGCGGACGCTGGAGCGGAGGAGGTGCCGCGAAGCCGTGTGGAAGGAGAAGAA
CAAGTTCGGGCTGCCGGAGGAGGAGCCCGAGAGAGGCACGACGGCGCTCATGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis