Browse Element(s) Details


OsAffx.12017.1.S1_at

Description tigr:9630.m01230
TID=OsAffx.12017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1336011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13320NANA2+7105533..7106147hypothetical protein
LOC_Os02g13330OsAffx.2595.1.S1_at11/112+7111106..7111729Bet v I allergen family protein, putative
LOC_Os02g13340Os.24143.1.A1_at10/112+7115786..7119630pentatricopeptide, putative, expressed
LOC_Os02g13350OsAffx.12016.1.S1_at11/112+7123770..7126123hydrolase, NUDIX family protein, expressed
LOC_Os02g13360OsAffx.12017.1.S1_at11/112+7126765..7131311expressed protein
LOC_Os02g13370Os.52377.1.S1_s_at11/112+7132009..7133382expressed protein
LOC_Os02g13370Os.52377.1.S1_at7/112+7132009..7133382expressed protein
LOC_Os02g13380Os.4170.1.S1_at8/112+7135189..7138046Early nodulin 93, putative, expressed
LOC_Os02g13390NANA2+7141810..7143857hypothetical protein
LOC_Os02g13400Os.7296.1.S1_at11/112+7144563..7150536Poly polymerase central domain containing protein, expressed
LOC_Os02g13410OsAffx.2597.1.S1_at11/112+7154364..7157124Protein kinase domain containing protein, expressed
LOC_Os02g13410Os.46572.2.S1_x_at1/112+7154364..7157124Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12017.1.S1_at--489--5811Chr02:7128727..7128751 (25 bp)
GACCCGGGCTTCCACAATAAGAACT
LOC_Os02g13360
OsAffx.12017.1.S1_at--797--5471Chr02:7128747..7128771 (25 bp)
GAACTTTCAGGCTTCTTGATTTGGG
LOC_Os02g13360
OsAffx.12017.1.S1_at--204--2931Chr02:7129524..7129548 (25 bp)
AAGGCACGGCCAAGAGATTTACAGA
LOC_Os02g13360
OsAffx.12017.1.S1_at--513--6891Chr02:7129923..7129947 (25 bp)
GTATACCTCTTGTTGCATACCATGA
LOC_Os02g13360
OsAffx.12017.1.S1_at--21--8171Chr02:7129948..7129972 (25 bp)
GGAACAATGTTTGACCCTCTTTGAA
LOC_Os02g13360
OsAffx.12017.1.S1_at--711--4111Chr02:7129962..7129986 (25 bp)
CCCTCTTTGAACATCCTTTGGTTGA
LOC_Os02g13360
OsAffx.12017.1.S1_at--772--8811Chr02:7129989..7130013 (25 bp)
TGTTGCACACAATCCACTATGAGAC
LOC_Os02g13360
OsAffx.12017.1.S1_at--662--1091Chr02:7130115..7130139 (25 bp)
AGTGGTGCCTTCAGTTGAGGACCTC
LOC_Os02g13360
OsAffx.12017.1.S1_at--412--9651Chr02:7130923..7130946 (24 bp)
TCAGAAGTTGCTTTTCCTTGACAAA
LOC_Os02g13360
OsAffx.12017.1.S1_at--183--5111Chr02:7131004..7131028 (25 bp)
GCACGTGTTATCAAAGCGCATTCAA
LOC_Os02g13360
OsAffx.12017.1.S1_at--810--6051Chr02:7131037..7131061 (25 bp)
GAGATTGTTCCACTTAATGCTTCAA
LOC_Os02g13360
Target Sequence 
GACCCGGGCTTCCACAATAAGAACTTTCAGGCTTCTTGATTTGGGAGGGAAATATCGTTTTATATCAGAGAGTTCACCTG
GTGTATTTCTACAGGGTTCACTTGTTTATGGAAGGCACGGCCAAGAGATTTACAGAGCAAACTTAGGTTTGGATATCTGC
AAGGAGGCATTTTTGTACTCCTTGAAGTATAGTATACCTCTTGTTGCATACCATGAGGAACAATGTTTGACCCTCTTTGA
ACATCCTTTGGTTGATTTGTTGCACACAATCCACTATGAGACCAAGGTAAAAGTGGTGCCTTCAGTTGAGGACCTCTTGG
GGTATTCATCTTTTCAGAAGTTGCTTTTCCTTGACAAAGTGGATGGGGATTCATCTGTACTGAGACAGCATTGGTCAGAA
CTAACACAAGGAAGAGCACGTGTTATCAAAGCGCATTCAAGTATGATTGAGATTGTTCCACTTAATGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis