Browse Element(s) Details


OsAffx.12018.1.S1_at

Description tigr:9630.m01239
TID=OsAffx.12018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance protein - like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1346011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13420Os.7123.2.S1_x_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13420Os.7123.2.S1_at11/112+7164809..7166419Leucine Rich Repeat family protein, expressed
LOC_Os02g13430OsAffx.2598.1.S1_at11/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13430Os.7123.2.S1_x_at1/112+7172556..7175908Leucine Rich Repeat family protein, expressed
LOC_Os02g13440NANA2+7177378..7178234hypothetical protein
LOC_Os02g13450OsAffx.2599.1.S1_at10/112+7179394..7181309hypothetical protein
LOC_Os02g13460OsAffx.12018.1.S1_at11/112+7183462..7187529Leucine Rich Repeat family protein
LOC_Os02g13470NANA2+7192204..7198866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g13480OsAffx.12251.2.A1_at11/112+7203990..7204825hypothetical protein
LOC_Os02g13490Os.14491.2.S1_x_at4/112+7206344..7209363transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13490Os.47463.1.S1_x_at4/112+7206344..7209363transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12018.1.S1_at--671--2851Chr02:7184134..7184158 (25 bp)
AAGTCGCTGGTGCTTGACAGTAACA
LOC_Os02g13460
OsAffx.12018.1.S1_at--986--2971Chr02:7184104..7184128 (25 bp)
AATGGGACCTATCAGGGTGCTGCCA
LOC_Os02g13460
OsAffx.12018.1.S1_at--986--9191Chr02:7184084..7184108 (25 bp)
TGCCATTGGAGGTCTCGTGGAGCTT
LOC_Os02g13460
OsAffx.12018.1.S1_at--261--9771Chr02:7184039..7184063 (25 bp)
TAATCCGTTCAAGGCTAGTCTAATT
LOC_Os02g13460
OsAffx.12018.1.S1_at--298--5431Chr02:7183961..7183985 (25 bp)
GAACCTGATTGGTAACATCCCTAAT
LOC_Os02g13460
OsAffx.12018.1.S1_at--812--8511Chr02:7183645..7183669 (25 bp)
TGGAATGCTGCCGAATCTTACCGAC
LOC_Os02g13460
OsAffx.12018.1.S1_at--852--10611Chr02:7183619..7183643 (25 bp)
TTCGGCTATTCACGTGCCATGGAGT
LOC_Os02g13460
OsAffx.12018.1.S1_at--414--9191Chr02:7183605..7183629 (25 bp)
TGCCATGGAGTGTTTCCGGTGAGCC
LOC_Os02g13460
OsAffx.12018.1.S1_at--1077--5631Chr02:7183569..7183593 (25 bp)
GACACCATCCACATTATCAAGGCAT
LOC_Os02g13460
OsAffx.12018.1.S1_at--278--10171Chr02:7183555..7183579 (25 bp)
TATCAAGGCATCCAACAACCACTTT
LOC_Os02g13460
OsAffx.12018.1.S1_at--1057--7191Chr02:7183504..7183528 (25 bp)
GTCGTGTGCGATGCTTACCATAGTT
LOC_Os02g13460
Target Sequence 
AAGTCGCTGGTGCTTGACAGTAACAATTTCAATGGGACCTATCAGGGTGCTGCCATTGGAGGTCTCGTGGAGCTTGAGAT
GCTAACATTGGCATATAATCCGTTCAAGGCTAGTCTAATTCCAAACGAGTTTGGCAAGCTGACTAAGCTGACATATCTGT
GGCTATCATGGATGAACCTGATTGGTAACATCCCTAATGTTCTGTCAGCATTGACAGAGCTCGAGCTATTGGACATATCA
ATAAATAAGTTGGAAGGAAAAAATCCCAAAGAGCTTGATTTGTCCATCAACAAGCTCACCGGATCAATACCAGAAGATAT
TGTGAACTTGAAGAACTTGAAAATTCTATACTTGTACTACAACAACCTCGTTGGACAAATCCCAAGTGGTGTTGGAATGC
TGCCGAATCTTACCGACCTTCGGCTATTCACGTGCCATGGAGTGTTTCCGGTGAGCCTCGGGGACTGCGACACCATCCAC
ATTATCAAGGCATCCAACAACCACTTTGTTGGGGACTTCCCAGAGAAAATATGGTCGTGTGCGATGCTTACCATAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis