Browse Element(s) Details


OsAffx.12046.1.S1_at

Description tigr:9630.m01401
TID=OsAffx.12046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1501011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14970OsAffx.12044.1.S1_at11/112+8350305..8352194expressed protein
LOC_Os02g14980OsAffx.2612.1.S1_at11/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14980OsAffx.15454.1.S1_x_at1/112+8358863..8362413Sodium/calcium exchanger protein, expressed
LOC_Os02g14990NANA2+8363274..8363903Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15000NANA2+8367352..8367987Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15010OsAffx.12046.1.S1_at11/112+8375342..8375983Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g15020NANA2+8380540..8381109Zinc finger, C3HC4 type family protein
LOC_Os02g15030OsAffx.24263.1.S1_at11/112+8385914..8386709hypothetical protein
LOC_Os02g15040OsAffx.12047.1.S1_at10/112+8390583..8392147hypothetical protein
LOC_Os02g15050Os.52655.1.S1_x_at2/112+8394293..8395144hypothetical protein
LOC_Os02g15050OsAffx.19426.1.S1_x_at1/112+8394293..8395144hypothetical protein
LOC_Os02g15060OsAffx.12048.1.S1_at10/112+8396789..8399605Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12046.1.S1_at--512--491Chr02:8375908..8375932 (25 bp)
ATCGGCGGCACGAGCCTGCTCGTCT
LOC_Os02g15010
OsAffx.12046.1.S1_at--1116--9091Chr02:8375892..8375916 (25 bp)
TGCTCGTCTACCAGCTCGTCAGGCT
LOC_Os02g15010
OsAffx.12046.1.S1_at--79--9991Chr02:8375884..8375908 (25 bp)
TACCAGCTCGTCAGGCTGGCGCGGA
LOC_Os02g15010
OsAffx.12046.1.S1_at--125--9431Chr02:8375817..8375841 (25 bp)
TCGTGTTCTGGGTCAGCATCAACGC
LOC_Os02g15010
OsAffx.12046.1.S1_at--337--10611Chr02:8375812..8375836 (25 bp)
TTCTGGGTCAGCATCAACGCCGTCG
LOC_Os02g15010
OsAffx.12046.1.S1_at--529--3731Chr02:8375786..8375810 (25 bp)
CTACTCGGTCTTCTGCGGCATGCTC
LOC_Os02g15010
OsAffx.12046.1.S1_at--1080--611Chr02:8375767..8375791 (25 bp)
ATGCTCTTCCCGTGGTCCGCGCTGA
LOC_Os02g15010
OsAffx.12046.1.S1_at--677--4411Chr02:8375624..8375648 (25 bp)
GCCACCGCACATGTACGTGCTGGAA
LOC_Os02g15010
OsAffx.12046.1.S1_at--685--3511Chr02:8375615..8375639 (25 bp)
CATGTACGTGCTGGAACGCGAGCCG
LOC_Os02g15010
OsAffx.12046.1.S1_at--1111--8691Chr02:8375436..8375460 (25 bp)
TGTGCCTGCACATGTTCCACCGGCG
LOC_Os02g15010
OsAffx.12046.1.S1_at--532--1771Chr02:8375418..8375442 (25 bp)
ACCGGCGGTGCATCGATCCGTGGCT
LOC_Os02g15010
Target Sequence 
ATCGGCGGCACGAGCCTGCTCGTCTACCAGCTCGTCAGGCTGGCGCGGACGCCGGGGAGCAAGGGCGGCGTCGTGGCGCT
CGCCATCTTCCTCGTGTTCTGGGTCAGCATCAACGCCGTCGCCTACTCGGTCTTCTGCGGCATGCTCTTCCCGTGGTCCG
CGCTGAGGCGGTGCCTCGCGCCGCTCCCGAGCGCCGCCCGGTGGCTGCTCTGCCTGCCGTGCCGGTGCGCGCGGCGGCGG
CGGCGGCGTCCGGCGACGAGCACCTCCTCGTCCGCTTCTGCTCTGCCACCGCACATGTACGTGCTGGAACGCGAGCCGCC
GGTGAGGTGGGGGGCGCGGGTTGCGACGGCGGACGACATCCCCGCGTACGAGCAGCCGGCGGCGAGCGAGGGCGGCGCGG
CGGCGGCGGCGGCGGAGTGCGCGGTGTGCCTGGGCGAGGTGGAGAAGGGGGAGATGGTGAAGCGGCTGCCGGTGTGCCTG
CACATGTTCCACCGGCGGTGCATCGATCCGTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis