Browse Element(s) Details


OsAffx.12065.1.S1_at

Description tigr:9630.m01508
TID=OsAffx.12065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Xa1-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1606011/11NBS-LRR disease resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16040Os.7899.1.S1_at11/112+9116018..9119492Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os02g16050Os.14919.1.S1_at5/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050Os.56216.1.S1_at2/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16050OsAffx.29313.1.S1_at1/112+9123054..9130846transposon protein, putative, Mutator sub-class
LOC_Os02g16060OsAffx.12065.1.S1_at11/112+9136746..9140118NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g16070OsAffx.12066.1.S1_at10/112+9142456..9144354Leucine Rich Repeat family protein
LOC_Os02g16080Os.52564.1.S1_at8/112+9148257..9153741retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16080Os.14444.1.S1_at1/112+9148257..9153741retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16090NANA2+9155584..9158764retrotransposon protein, putative, LINE subclass
LOC_Os02g16100NANA2+9160561..9161199Xa1, putative
LOC_Os02g16110OsAffx.12067.1.S1_at11/112+9163263..9166120Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12065.1.S1_at--702--3453Chr02:9139731..9139755 (25 bp)
CAGTACTTTTTCTTTACACCTTCTG
LOC_Os02g16060
OsAffx.12065.1.S1_at--300--9854Chr11:21681416..21681440 (25 bp)
TACACCTTCTGAAAACAGTACTACT
NONE
OsAffx.12065.1.S1_at--205--3455Chr06:8747112..8747136 (25 bp)
CAGTACTACTACTACGCACATCGTA
NONE
OsAffx.12065.1.S1_at--544--9951Chr02:9139772..9139796 (25 bp)
TACGCACATCGTACATACACTAGGG
LOC_Os02g16060
OsAffx.12065.1.S1_at--1024--6031Chr02:9139913..9139937 (25 bp)
GAGATATGACATGTGGTAACCTACC
LOC_Os02g16060
OsAffx.12065.1.S1_at--928--7811Chr02:9139927..9139951 (25 bp)
GGTAACCTACCAGCTTTTATATGAG
LOC_Os02g16060
OsAffx.12065.1.S1_at--768--10111Chr02:9139946..9139970 (25 bp)
TATGAGTGTCACGTGGTAGCTTAAT
LOC_Os02g16060
OsAffx.12065.1.S1_at--415--3991Chr02:9139957..9139981 (25 bp)
CGTGGTAGCTTAATAGCGTTTCTAA
LOC_Os02g16060
OsAffx.12065.1.S1_at--869--10173Chr07:18766870..18767144 (25 bp)
TATAAATACTCTCAAGCCGCCACAT
NONE
OsAffx.12065.1.S1_at--279--8452Chr06:23192392..23192411 (20 bp)
TGGCCTTCTACAAACGTTCCTAAAT
NONE
OsAffx.12065.1.S1_at--893--3992Chr04:5341793..5341814 (22 bp)
CGTTCCTAAATCACCACGTGGCATT
NONE
Target Sequence 
CAGTACTTTTTCTTTACACCTTCTGAAAACAGTACTACTACTACGCACATCGTACATACACTAGGGGAGTTTAGGAGAAA
GTGTTAATAGATATGTAAAATCACATCTTATCGATTTAAGTAAAAATCCATAGTTAAATATTTTTTCTTTTTCTTATAAT
TTTTAATAATTCTTTTAATTTAGAGATATGACATGTGGTAACCTACCAGCTTTTATATGAGTGTCACGTGGTAGCTTAAT
AGCGTTTCTAAAAAGTTTAATGGACTTATATATAGTAAAAGTTAATTTAACTTCCTATAAATACTCTCAAGCCGCCACAT
GGCCTTCTACAAACGTTCCTAAATCACCACGTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis