Browse Element(s) Details


OsAffx.12071.1.S1_s_at

Description tigr:9630.m01551
TID=OsAffx.12071.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoribosylanthranilate isomerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1663011/11N-anthranilate isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16580NANA2+9475114..9477681transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16590NANA2+9479608..9484114transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g16600Os.8797.1.S1_at11/112+9489228..9494238expressed protein
LOC_Os02g16610OsAffx.12070.1.S1_at11/112+9495105..9495710Harpin-induced protein 1 containing protein
LOC_Os02g16620Os.6361.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16620Os.51924.1.S1_at11/112+9497685..9500376reticulon family protein, putative, expressed
LOC_Os02g16630OsAffx.12071.1.S1_s_at11/112+9502473..9505302N-anthranilate isomerase family protein, expressed
LOC_Os02g16640Os.5630.1.S1_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16640Os.5630.1.S1_s_at11/112+9505847..9509896U1 zinc finger family protein, expressed
LOC_Os02g16650Os.49173.1.S1_at11/112+9510000..9514046pentatricopeptide, putative, expressed
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0007275biological_processdevelopment
GO:0009411biological_processresponse to UV
GO:0009628biological_processresponse to abiotic stimulus
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0004640molecular_functionphosphoribosylanthranilate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12071.1.S1_s_at--919--371Chr02:9504347..9504371 (25 bp)
ATCAACGCTCTTCCTGATGAAAAAT
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--793--10531Chr02:9504798..9504822 (25 bp)
TTCAGATGCCGTCTGTTCGAAGCAA
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--95--7531Chr02:9504829..9504853 (25 bp)
GTGGCTTTTAGCTGGAGGCCTTCAC
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--291--6231Chr02:9504843..9504867 (25 bp)
GAGGCCTTCACGCTGATAATGTTTG
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--300--10831Chr02:9504865..9504889 (25 bp)
TTGTGATGCCTTTTATGCCCTGAAA
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--782--8211Chr02:9504914..9504938 (25 bp)
GGAATATGTGCTCCTGATGGTATCA
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--1038--2271Chr02:9504980..9505004 (25 bp)
AAATCCTTGGGCAGATCACAATGAT
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--350--6771Chr02:9505022..9505046 (25 bp)
GTTAACCTCATTTTGTTTGCTTAAT
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--990--6091Chr02:9505062..9505086 (25 bp)
GAGTCTCTTCTGAAGCAAGCTGTTC
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--422--3091Chr02:9505178..9505202 (25 bp)
AATAAGTGCACTCTCTGTGTCTCAA
LOC_Os02g16630
OsAffx.12071.1.S1_s_at--353--9511Chr02:9505189..9505213 (25 bp)
TCTCTGTGTCTCAAGTCGAAGGCAA
LOC_Os02g16630
Target Sequence 
ATCAACGCTCTTCCTGATGAAAAATATGAGCTTGATTGGTTCTTGGTGGATAGTGCCAAAGGTGGAAGTGGCAAGGGATT
CAACTGGCAGAAGTTTCAGATGCCGTCTGTTCGAAGCAAGAATGGGTGGCTTTTAGCTGGAGGCCTTCACGCTGATAATG
TTTGTGATGCCTTTTATGCCCTGAAACCAAATGGAGTGGATGTTAGCAGTGGAATATGTGCTCCTGATGGTATCAGAAAA
GATCCCACGAGGATTTCTTCTTTCATGAGAAATGTTAAATCCTTGGGCAGATCACAATGATTATTCTGGTGTTTGGAGGT
TAACCTCATTTTGTTTGCTTAATGTGGAGAATGAAGCAGAGTCTCTTCTGAAGCAAGCTGTTCATTTATTCAGCATGGTA
GTGGTAAATGCCATTGGGGTTAAAGTCGAAATAGTGACCAAATTTCTGAGGATTTTGCTAGTGATGCAGTAACTAATAAG
TGCACTCTCTGTGTCTCAAGTCGAAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12071.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis