Browse Element(s) Details


OsAffx.12117.1.S1_at

Description tigr:9630.m01840
TID=OsAffx.12117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1929011/11hypothetical protein
LOC_Os09g283702/11retrotransposon protein, putative, LINE subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19260NANA2+11254040..11254810retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19270NANA2+11255033..11259454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19280OsAffx.2681.1.S1_at11/112+11265363..11271755expressed protein
LOC_Os02g19290OsAffx.12117.1.S1_at11/112+11273052..11273980hypothetical protein
LOC_Os02g19300OsAffx.8279.1.S1_at2/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300Os.52731.1.S1_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19300OsAffx.22699.1.S1_x_at1/112+11276590..11283484retrotransposon protein, putative, unclassified
LOC_Os02g19310Os.27066.1.A1_x_at3/112+11284509..11287664hypothetical protein
LOC_Os02g19320OsAffx.2683.1.S1_at11/112+11289886..11290579hypothetical protein
LOC_Os02g19330Os.27045.1.S1_a_at11/112+11292717..11300266expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12117.1.S1_at--814--4911Chr02:11273257..11273281 (25 bp)
GCTTCGTGTGTGACTGCCAGATTGA
LOC_Os02g19290
OsAffx.12117.1.S1_at--182--8871Chr02:11273279..11273303 (25 bp)
TGATGATTTTGCCTTACTGCCGTTC
LOC_Os02g19290
OsAffx.12117.1.S1_at--487--4371Chr02:11273465..11273489 (25 bp)
CCACTGCGCCAAAGAGTCATACTTG
LOC_Os02g19290
OsAffx.12117.1.S1_at--118--10751Chr02:11273487..11273511 (25 bp)
TTGCACTCGAAGGAATACCACCAGA
LOC_Os02g19290
OsAffx.12117.1.S1_at--425--1771Chr02:11273595..11273619 (25 bp)
ACCTGTCGATTTTCAGATTGTCTGC
LOC_Os02g19290
OsAffx.12117.1.S1_at--384--831Chr02:11273620..11273644 (25 bp)
ATGGACAACTGACCGCAATCTCATC
LOC_Os02g19290
OsAffx.12117.1.S1_at--543--5511Chr02:11273687..11273711 (25 bp)
GAACAATCATCTGACCAAGGCTGGA
LOC_Os02g19290
OsAffx.12117.1.S1_at--811--2352Chr02:11273752..11273776 (25 bp)
AAAGCTTTTTGACTACACTGATGAA
LOC_Os02g19290
OsAffx.12117.1.S1_at--389--2751Chr02:11273823..11273847 (25 bp)
AAGACAACCGTCGACTGCCAGTTAT
LOC_Os02g19290
OsAffx.12117.1.S1_at--1095--2052Chr02:11273852..11273876 (25 bp)
ACATTCCAGTGGGTATCTCGGCAAA
LOC_Os02g19290
OsAffx.12117.1.S1_at--617--1931Chr02:11273926..11273950 (25 bp)
ACGGCGTCTTCCTCTTGAATTTCGT
LOC_Os02g19290
Target Sequence 
GCTTCGTGTGTGACTGCCAGATTGATGATTTTGCCTTACTGCCGTTCAGGCACAAAATTGTCCCAAACCCACTGCGCCAA
AGAGTCATACTTGCACTCGAAGGAATACCACCAGAATTATGGAACAAGCAGGCCATGAAAGAATTACTAGACGGTAGTTG
TATGGTTGAAGAGCTTTATGAAGAGCATCATATACAAAACCTGTCGATTTTCAGATTGTCTGCATGGACAACTGACCGCA
ATCTCATCCCCAAACTAATGGATTGGAATATTGAGGAGGTTCAAGGAGAGGAACAATCATCTGACCAAGGCTGGAAACGC
AATGCAGATTTATTTGTCATATTAATTCACATTGAAAAGCTTTTTGACTACACTGATGAAGACAGCGACAATGAGATCGA
TGGAGAAGTTTTAAAGCAATATGAGAAAGACAACCGTCGACTGCCAGTTATAAAGACATTCCAGTGGGTATCTCGGCAAA
CAGACACAGATAGCGGACCTGTTGAAGGCGGGTCGCCGGCAAGGCCACCACGGCGTCTTCCTCTTGAATTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis