Browse Element(s) Details


OsAffx.12135.1.S1_at

Description tigr:9630.m01964
TID=OsAffx.12135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g205208/11hypothetical protein
LOC_Os09g069791/11
LOC_Os07g295501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g233101/11hypothetical protein
LOC_Os12g215601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20480OsAffx.12134.1.S1_at11/112+12079373..12079954resistance protein, putative
LOC_Os02g20490Os.51211.1.S1_at11/112+12086013..12089345expressed protein
LOC_Os02g20500OsAffx.2696.1.S1_x_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20500OsAffx.2696.1.S1_at11/112+12089710..12091108hypothetical protein
LOC_Os02g20510OsAffx.2697.1.S1_at11/112+12100867..12101382hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_x_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20520OsAffx.12135.1.S1_at8/112+12103228..12105794hypothetical protein
LOC_Os02g20530OsAffx.12136.1.S1_at11/112+12106516..12110223hypothetical protein
LOC_Os02g20540Os.14430.1.S1_at11/112+12113917..12114962Fasciclin domain containing protein, expressed
LOC_Os02g20550OsAffx.2698.1.S1_at11/112+12123596..12123874hypothetical protein
LOC_Os02g20560Os.17961.1.S1_a_at11/112+12127922..12129229Fasciclin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12135.1.S1_at--468--9171Chr02:12105088..12105112 (25 bp)
TGCCCATTATGCATGATCATCGGTG
LOC_Os02g20520
OsAffx.12135.1.S1_at--899--4311Chr02:12105085..12105109 (25 bp)
CCATTATGCATGATCATCGGTGACG
LOC_Os02g20520
OsAffx.12135.1.S1_at--667--151Chr02:12105083..12105107 (25 bp)
ATTATGCATGATCATCGGTGACGGG
LOC_Os02g20520
OsAffx.12135.1.S1_at--416--7691Chr02:12105059..12105083 (25 bp)
GGTGGAGTTTAGAACCGACAAAGAT
LOC_Os02g20520
OsAffx.12135.1.S1_at--907--6051Chr02:12105059..12105079 (21 bp)
GAGTTTAGAACCGACAAAGATATAA
LOC_Os02g20520
OsAffx.12135.1.S1_at--794--6891NONE
GTATCGAATCCAAGAACGGCAGTTA
NONE
OsAffx.12135.1.S1_at--693--211NONE
ATCCAAGAACGGCAGTTATGACGGT
NONE
OsAffx.12135.1.S1_at--447--3231NONE
CAAGAACGGCAGTTATGACGGTTGT
NONE
OsAffx.12135.1.S1_at--660--25728Chr11:27757808..27757829 (22 bp)
AACGGCAGTTATGACGGTTGTGAGA
NONE
OsAffx.12135.1.S1_at--127--2371Chr02:12103650..12103674 (25 bp)
AAGGGAAAATGTCCGAACTGCCCTG
LOC_Os02g20520
OsAffx.12135.1.S1_at--211--18129Chr11:27757886..27757910 (25 bp)
ACGCCAAACCCCAGGATCAACGGTG
NONE
Target Sequence 
TGCCCATTATGCATGATCATCGGTGACGGGGTGGAGTTTAGAACCGACAAAGATATAAAATCCGCAAGCGTACGGATATA
CCGATGTAGCACTTCCCCTACGGAGTATTTCAAGGGTATCGAATCCAAGAACGGCAGTTATGACGGTTGTGAGAAGGGAA
AATGTCCGAACTGCCCTGCAACCGTCATTGGGAGAACATCTGGAGCGTCCACGCCAAACCCCAGGATCAACGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis