Browse Element(s) Details


OsAffx.12184.1.S1_x_at

Description tigr:9630.m02347
TID=OsAffx.12184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g456303/11hypothetical protein
LOC_Os07g478701/11hypothetical protein
LOC_Os06g189401/11hypothetical protein
LOC_Os12g224001/11hypothetical protein
LOC_Os11g313001/11hypothetical protein
LOC_Os10g111801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45610Os.45173.5.S1_x_at4/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.47999.2.A1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.3.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45610Os.45173.1.S1_x_at1/117+27214430..27225217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45620OsAffx.10371.1.S1_at1/117+27231397..27241604retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45620OsAffx.5382.1.S1_at1/117+27231397..27241604retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45620OsAffx.22699.1.S1_x_at1/117+27231397..27241604retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45630OsAffx.5646.1.S1_at11/117+27242513..27245732hypothetical protein
LOC_Os07g45630OsAffx.12184.1.S1_x_at3/117+27242513..27245732hypothetical protein
LOC_Os07g45630OsAffx.18377.1.S1_x_at1/117+27242513..27245732hypothetical protein
LOC_Os07g45640Os.46306.1.S1_x_at2/117+27246623..27247384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45650NANA7+27253704..27259793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45660NANA7+27260109..27263049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45670NANA7+27266475..27268730transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12184.1.S1_x_at--928--5231Chr02:14575504..14575622 (25 bp)
GAATACGCTGAGCACATTTCCAATC
NONE
OsAffx.12184.1.S1_x_at--978--311Chr02:14575502..14575620 (25 bp)
ATACGCTGAGCACATTTCCAATCTA
NONE
OsAffx.12184.1.S1_x_at--1065--8891Chr02:14575496..14575518 (23 bp)
TGAGCACATTTCCAATCTAGTTGCA
NONE
OsAffx.12184.1.S1_x_at--179--3597Chr12:12646193..12646214 (22 bp)
CATTTCCAATCTAGTTGCAATTCCA
LOC_Os12g22400
OsAffx.12184.1.S1_x_at--224--9551Chr02:14575463..14575487 (25 bp)
TCTATCGCATGAGAGACATTATTTC
NONE
OsAffx.12184.1.S1_x_at--943--2071Chr02:14575448..14575472 (25 bp)
ACATTATTTCCTTGGTCTGATCGGC
NONE
OsAffx.12184.1.S1_x_at--450--10412Chr07:27245512..27245532 (21 bp)
TTATTTCCTTGGTCTGATCGGCAAT
LOC_Os07g45630
OsAffx.12184.1.S1_x_at--1052--9232Chr07:27245511..27245531 (21 bp)
TCCTTGGTCTGATCGGCAATCTCGA
LOC_Os07g45630
OsAffx.12184.1.S1_x_at--1062--4312Chr07:27245511..27245530 (20 bp)
CCTTGGTCTGATCGGCAATCTCGAC
LOC_Os07g45630
OsAffx.12184.1.S1_x_at--960--8831Chr02:14575431..14575455 (25 bp)
TGATCGGCAATCTCGACCCTACTGA
NONE
OsAffx.12184.1.S1_x_at--329--9591Chr02:14575349..14575373 (25 bp)
TCATTGGAAGAGCACCTTCAAGTCT
NONE
Target Sequence 
GAATACGCTGAGCACATTTCCAATCTAGTTGCAATTCCAAGTCTATCGCATGAGAGACATTATTTCCTTGGTCTGATCGG
CAATCTCGACCCTACTGATTTCATCATTGGCGAAACCAATAGAATCCCTTTCAAATTGGCCAACCCTAATCTAGGTCATT
GGAAGAGCACCTTCAAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12184.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis