Browse Element(s) Details


OsAffx.12203.1.S1_at

Description tigr:9630.m02491
TID=OsAffx.12203.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2644010/11prefoldin-related KE2 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26400OsAffx.12202.1.S1_at11/112+15496752..15501303nuclease, EndA/NucM family protein, expressed
LOC_Os02g26410Os.46012.2.S1_x_at6/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.46012.3.S1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26410Os.27088.1.A1_x_at3/112+15509126..15509677retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26420NANA2+15510255..15513417retrotransposon protein, putative, unclassified
LOC_Os02g26430Os.56922.1.S1_at11/112+15515627..15516852WRKY DNA binding domain containing protein, expressed
LOC_Os02g26440Os.39418.1.S1_s_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440OsAffx.12203.1.S1_at10/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26440Os.39418.1.S1_at4/112+15518426..15521844prefoldin-related KE2 family protein, putative, expressed
LOC_Os02g26450OsAffx.12204.1.S1_at11/112+15523769..15526038transposon protein, putative, unclassified
LOC_Os02g26460OsAffx.12205.1.S1_at11/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26460OsAffx.15672.1.S1_x_at1/112+15527268..15527984hAT dimerisation domain-containing protein, putative
LOC_Os02g26470OsAffx.2760.1.S1_at11/112+15537844..15538277expressed protein
LOC_Os02g26480Os.49460.1.S1_at10/112+15543448..15552430Serine carboxypeptidase I precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12203.1.S1_at--842--371NONE
ATCAAGCAGGATCATTCAAGGGAAG
NONE
OsAffx.12203.1.S1_at--662--3431Chr02:15519270..15519294 (25 bp)
CAGTTGGAAATCGTGTTTGTTTGCA
LOC_Os02g26440
OsAffx.12203.1.S1_at--1153--5131Chr02:15519292..15519553 (25 bp)
GCAAACTGCAGTTTTAGGGCCAGAT
LOC_Os02g26440
OsAffx.12203.1.S1_at--1158--8431Chr02:15519546..15519570 (25 bp)
GGCCAGATAGGTTTGACCCTTCATA
LOC_Os02g26440
OsAffx.12203.1.S1_at--729--9891Chr02:15519569..15519593 (25 bp)
TACTTTTACTTGACTGCCTTGACTG
LOC_Os02g26440
OsAffx.12203.1.S1_at--192--4451Chr02:15519584..15519608 (25 bp)
GCCTTGACTGGATATCCACCACAGT
LOC_Os02g26440
OsAffx.12203.1.S1_at--720--3371Chr02:15519600..15519624 (25 bp)
CACCACAGTTTTCCATGTTGCATCT
LOC_Os02g26440
OsAffx.12203.1.S1_at--567--731Chr02:15519614..15519638 (25 bp)
ATGTTGCATCTAACTCCTATGTCTC
LOC_Os02g26440
OsAffx.12203.1.S1_at--872--3731Chr02:15519623..15519644 (22 bp)
CTAACTCCTATGTCTCTCTATGAAG
LOC_Os02g26440
OsAffx.12203.1.S1_at--1077--7151Chr02:15519634..15520043 (25 bp)
GTCTCTCTATGAAGTTAGCTGTTTG
LOC_Os02g26440
OsAffx.12203.1.S1_at--934--8231Chr02:15520047..15520070 (24 bp)
GGCAGAACATTATTACTCAGTCCTT
LOC_Os02g26440
Target Sequence 
ATCAAGCAGGATCATTCAAGGGAAGGGAAACCAGTTGGAAATCGTGTTTGTTTGCAAACTGCAGTTTTAGGGCCAGATAG
GTTTGACCCTTCATACTTTTACTTGACTGCCTTGACTGGATATCCACCACAGTTTTCCATGTTGCATCTAACTCCTATGT
CTCTCTATGAAGTTAGCTGTTTGATGGGCAGAACATTATTACTCAGTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis