Browse Element(s) Details


OsAffx.12209.1.S1_at

Description tigr:9630.m02511
TID=OsAffx.12209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26600OsAffx.2763.1.S1_at11/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.5.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26600Os.9943.2.S1_x_at1/112+15609529..15613125expressed protein
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed
LOC_Os02g26670OsAffx.24437.1.S1_at11/112+15653602..15654807expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12209.1.S1_at--723--8891Chr02:15633545..15633569 (25 bp)
TGAGTCGCGCCTGGTTTATAGCCTT
LOC_Os02g26640
OsAffx.12209.1.S1_at--972--8571Chr02:15633534..15633558 (25 bp)
TGGTTTATAGCCTTGACCCAGAAAA
LOC_Os02g26640
OsAffx.12209.1.S1_at--917--7371Chr02:15633496..15633520 (25 bp)
GTGAGAACCCTAGCACAGGCGATCT
LOC_Os02g26640
OsAffx.12209.1.S1_at--900--6411Chr02:15633476..15633500 (25 bp)
GATCTCGTCTGCGACTCTTGCACGG
LOC_Os02g26640
OsAffx.12209.1.S1_at--1088--1911Chr02:15633389..15633413 (25 bp)
ACGGTGTGCAGTACGGCCACCTCGA
LOC_Os02g26640
OsAffx.12209.1.S1_at--953--1752Chr05:22095985..22096009 (25 bp)
ACCTCGACCTCGTTGGCATGATGAC
NONE
OsAffx.12209.1.S1_at--391--4831Chr02:15632980..15633000 (21 bp)
GCTCAGGAATGCTGTGTGGACTGCA
LOC_Os02g26640
OsAffx.12209.1.S1_at--437--372Chr05:22096389..22096413 (25 bp)
ATCAATGGGCTAAAGGCTCATCTCC
NONE
OsAffx.12209.1.S1_at--36--8331Chr02:15632932..15632956 (25 bp)
GGCTCATCTCCAGGACAACAGGGAT
LOC_Os02g26640
OsAffx.12209.1.S1_at--1129--5451Chr02:15632896..15632920 (25 bp)
GAACAGGGCAGTGAGCCGTAGCAAA
LOC_Os02g26640
OsAffx.12209.1.S1_at--271--4931Chr02:15632860..15632884 (25 bp)
GCTTGAATCATTGAGAGCAGCTCTT
LOC_Os02g26640
Target Sequence 
TGAGTCGCGCCTGGTTTATAGCCTTGACCCAGAAAAATTTCCCCTTCTCGTGAGAACCCTAGCACAGGCGATCTCGTCTG
CGACTCTTGCACGGCGGCGAGAGTGGTGTGGTCAGAGGCGACGGGGCCGGAGATCTCCACCACGGACGCGGCGGCGACGG
TGTGCAGTACGGCCACCTCGACCTCGTTGGCATGATGACGAGCTCAGGAATGCTGTGTGGACTGCAAGAGAAGAAATCAA
TGGGCTAAAGGCTCATCTCCAGGACAACAGGGATGAAGCCTTGAAGAACAGGGCAGTGAGCCGTAGCAAAGAAAGCAATG
AGCTTGAATCATTGAGAGCAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis