Browse Element(s) Details


OsAffx.12211.1.S1_at

Description tigr:9630.m02528
TID=OsAffx.12211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2676011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26710OsAffx.24439.1.S1_at11/112+15684765..15685157cyclo-DOPA 5-O-glucosyltransferase, putative
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein
LOC_Os02g26770Os.11417.1.S1_at4/112+15711180..15712900Trans-cinnamate 4-monooxygenase, putative
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified
LOC_Os02g26790Os.51784.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26790OsAffx.24440.1.S1_s_at11/112+15719957..15721664expressed protein
LOC_Os02g26790Os.9574.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26800NANA2+15723235..15726667expressed protein
LOC_Os02g26810Os.11417.1.S1_at11/112+15728958..15730985Trans-cinnamate 4-monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12211.1.S1_at--867--6811Chr02:15709144..15709210 (25 bp)
GTTTTTCGGATGAATGCTCGTGCTC
LOC_Os02g26760
OsAffx.12211.1.S1_at--1--2311Chr02:15709230..15709254 (25 bp)
AAAGGGTGGAACCTGATCTGGTCCT
LOC_Os02g26760
OsAffx.12211.1.S1_at--179--491Chr02:15709245..15709269 (25 bp)
ATCTGGTCCTGTAATGTGCCCCAAA
LOC_Os02g26760
OsAffx.12211.1.S1_at--1126--431Chr02:15709278..15709302 (25 bp)
ATCTTTGGTTGGAGAGCAGCCACAA
LOC_Os02g26760
OsAffx.12211.1.S1_at--1124--10711Chr02:15710216..15710240 (25 bp)
TTGCTTGCAGAGATGGCCTCAACCT
LOC_Os02g26760
OsAffx.12211.1.S1_at--45--3651Chr02:15710260..15710284 (25 bp)
CTTCCGATTGCCGTTGAATCTGATT
LOC_Os02g26760
OsAffx.12211.1.S1_at--611--1251Chr02:15710354..15710378 (25 bp)
AGATTCGCTTTCTCATGACTGGAAC
LOC_Os02g26760
OsAffx.12211.1.S1_at--849--8191Chr02:15710382..15710406 (25 bp)
GGAAGTGTCTTTTGCCAAAGTGCAT
LOC_Os02g26760
OsAffx.12211.1.S1_at--722--2951Chr02:15710444..15710468 (25 bp)
AAGGCCGTTGTGAATCCATGATGGA
LOC_Os02g26760
OsAffx.12211.1.S1_at--68--8751Chr02:15710488..15710512 (25 bp)
TGTAATATGATCTCGCACCTTGTGT
LOC_Os02g26760
OsAffx.12211.1.S1_at--266--3371Chr02:15710503..15710527 (25 bp)
CACCTTGTGTGCGAGGACTCGTTTA
LOC_Os02g26760
Target Sequence 
GTTTTTCGGATGAATGCTCGTGCTCCTCGGACTACGCCATCAAGAAAGGGTGGAACCTGATCTGGTCCTGTAATGTGCCC
CAAAAAGTGAAAATCTTTGGTTGGAGAGCAGCCACAAATAGCTTACCAACTATGGAAAACAAGAAGAAGAGGAATTTTGG
AATTGTTGGACTCAATGTTAGGCAAGTGTGGCTTGCCACACTTTTTGTGGCCTACAAATTATGCAATGGGGCCCTGGAAT
CAGAGCTGATTGCTTGCAGAGATGGCCTCAACCTGGCGTTGCAGTGGACCCTGCTTCCGATTGCCGTTGAATCTGATTGT
CTGGAAATTATTCAGCTGTTGAATTCAAAGGAGAAGCTGCTGTCAGCCGAAGGATTTATAGTCAGGGAGATTCGCTTTCT
CATGACTGGAACAAAGGAAGTGTCTTTTGCCAAAGTGCATAGGAACCAAAATAGAGTTAGTCACTTTTTAGCAAATAAAG
GCCGTTGTGAATCCATGATGGAATTCTGGCCAGACGATAATTGTAATATGATCTCGCACCTTGTGTGCGAGGACTCGTTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis