Browse Element(s) Details


OsAffx.12218.1.S1_at

Description tigr:9630.m02560
TID=OsAffx.12218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27000Os.27422.2.S1_at11/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27000Os.27422.1.S1_at7/112+15859690..15870539ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os02g27010NANA2+15873981..15875254retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27020OsAffx.27207.1.S1_at10/112+15877457..15878416hypothetical protein
LOC_Os02g27030Os.12726.1.S1_at11/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27030Os.20514.1.S1_x_at1/112+15885668..15889423Cysteine proteinase 1 precursor, putative, expressed
LOC_Os02g27040OsAffx.12218.1.S1_at11/112+15893855..15895179hypothetical protein
LOC_Os02g27050OsAffx.7362.1.S1_x_at1/112+15896400..15898346transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g27060Os.11765.1.S1_at11/112+15904840..15909709HMG box family protein, expressed
LOC_Os02g27070Os.50299.1.S1_at11/112+15910212..15914036Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os02g27080OsAffx.24443.1.S1_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27080OsAffx.24443.1.S1_x_at11/112+15914329..15915022hypothetical protein
LOC_Os02g27090NANA2+15915593..15916777transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12218.1.S1_at--21--991Chr02:15893968..15893992 (25 bp)
AGGAGAGGAGATCGACATCTGCACC
LOC_Os02g27040
OsAffx.12218.1.S1_at--725--9031Chr02:15893987..15894011 (25 bp)
TGCACCATCACACTACTGAGTACTG
LOC_Os02g27040
OsAffx.12218.1.S1_at--1146--1171Chr02:15894005..15894029 (25 bp)
AGTACTGACTTGCTAATGGCGGCTT
LOC_Os02g27040
OsAffx.12218.1.S1_at--882--3731Chr02:15894017..15894041 (25 bp)
CTAATGGCGGCTTCATTGGTAGAGA
LOC_Os02g27040
OsAffx.12218.1.S1_at--725--7511Chr02:15894071..15894095 (25 bp)
GTGGATGCATGGAGGCTCACAACAA
LOC_Os02g27040
OsAffx.12218.1.S1_at--929--9691Chr02:15894087..15894111 (25 bp)
TCACAACAATGTCTCGGATTCTGCC
LOC_Os02g27040
OsAffx.12218.1.S1_at--465--10271Chr02:15894140..15894164 (25 bp)
TTTGCATTACCGCTCGCTGACATCT
LOC_Os02g27040
OsAffx.12218.1.S1_at--299--2311Chr02:15894482..15894506 (25 bp)
AAAGGCCGGAGCATGCGCCATCATT
LOC_Os02g27040
OsAffx.12218.1.S1_at--351--611Chr02:15894494..15894518 (25 bp)
ATGCGCCATCATTGTAGAAGAGCTC
LOC_Os02g27040
OsAffx.12218.1.S1_at--338--10031Chr02:15894508..15894532 (25 bp)
TAGAAGAGCTCAACGCTGGTGGCTG
LOC_Os02g27040
OsAffx.12218.1.S1_at--92--5611Chr02:15894636..15894660 (25 bp)
GACAACCCGGCATGTGGGTCTCAGG
LOC_Os02g27040
Target Sequence 
AGGAGAGGAGATCGACATCTGCACCATCACACTACTGAGTACTGACTTGCTAATGGCGGCTTCATTGGTAGAGAGGAGAA
CGGGTTCGTGGAGAACCGTAGGCGTGGATGCATGGAGGCTCACAACAATGTCTCGGATTCTGCCGTGGCGTCATCCACCG
CCACCTGCCTCCTTTGCATTACCGCTCGCTGACATCTTGCCCTCGCTCTATTGCCCTTTGGGAGGGGCAAAGGCCGGAGC
ATGCGCCATCATTGTAGAAGAGCTCAACGCTGGTGGCTGCGGCGAGGGAGTCGCCGTTGCCGGCGGCAATGGCAGCGGGG
GAGCAGTGCAAGACAATGACAGAGTTGAACGGCAAGCGGTCGCCGGCCACCGCCACCGTCACGACAACCCGGCATGTGGG
TCTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis