Browse Element(s) Details


OsAffx.12219.1.S1_at

Description tigr:9630.m02573
TID=OsAffx.12219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2715011/11hypothetical protein
LOC_Os12g132805/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27130OsAffx.24446.1.S1_at10/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27130OsAffx.4419.1.S1_at1/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27140OsAffx.24447.1.S1_at11/112+15972844..15974179hypothetical protein
LOC_Os02g27150OsAffx.12219.1.S1_at11/112+15975786..15976337hypothetical protein
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed
LOC_Os02g27210OsAffx.24449.1.S1_at11/112+16000553..16003428expressed protein
LOC_Os02g27210Os.54723.1.S1_at2/112+16000553..16003428expressed protein
LOC_Os02g27210Os.26894.1.A1_x_at1/112+16000553..16003428expressed protein
LOC_Os02g27210OsAffx.20993.1.S1_at1/112+16000553..16003428expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12219.1.S1_at--237--8053Chr12:7385818..7385842 (25 bp)
GGAGAATACCTTCGTCTCCTAGACA
NONE
OsAffx.12219.1.S1_at--962--4592Chr12:7385784..7385808 (25 bp)
GCGACGGCGCAAACAACGAAAGTGT
NONE
OsAffx.12219.1.S1_at--509--2493Chr12:7385753..7385777 (25 bp)
AACAGGTAGCCATCCAGTAAGCAGG
NONE
OsAffx.12219.1.S1_at--767--2433Chr12:7385702..7385726 (25 bp)
AAAATTGGCCGTATTTCACCTCGCG
NONE
OsAffx.12219.1.S1_at--291--6013Chr12:7385634..7385658 (25 bp)
GAGAGCACGGCAGCGAAGCTTCCAA
LOC_Os12g13280
OsAffx.12219.1.S1_at--639--2753Chr12:7385550..7385574 (25 bp)
AAGACACAGTGAAGCACAGCTGCTC
LOC_Os12g13280
OsAffx.12219.1.S1_at--365--2153Chr12:7385535..7385559 (25 bp)
ACAGCTGCTCACAGACCGTTACGGG
LOC_Os12g13280
OsAffx.12219.1.S1_at--292--8631Chr02:15975969..15975993 (25 bp)
TGGGAGACGCTATCGAACCACCGTT
LOC_Os02g27150
OsAffx.12219.1.S1_at--41--833Chr12:7385431..7385455 (25 bp)
ATGGACGGGCTTCTATTTTTCCCAG
LOC_Os12g13280
OsAffx.12219.1.S1_at--697--8513Chr12:7385386..7385410 (25 bp)
TGGACCATGTCCACAAAGCCAATGG
LOC_Os12g13280
OsAffx.12219.1.S1_at--383--2972Chr12:2953627..2953651 (25 bp)
AATGGCAATCTTCACTCGAGCAGAA
NONE
Target Sequence 
GGAGAATACCTTCGTCTCCTAGACACCCACGACGGCGACGGCGCAAACAACGAAAGTGTTCCTACAACAGGTAGCCATCC
AGTAAGCAGGGAGAAGGAGATCCTTCAAATGAAGAAAAAATTGGCCGTATTTCACCTCGCGGTCTCCATGGACGGCAACA
AAGTGAAAACAATTGGGAAGAAAGGAGAGCACGGCAGCGAAGCTTCCAAGGAAAGAAAACGAAACCGGGGAAGCAGAAAT
GGGAGGGGGCAGTTGGGCGGCATTGATGAAGACACAGTGAAGCACAGCTGCTCACAGACCGTTACGGGGAATTGTGGGAG
ACGCTATCGAACCACCGTTGGCTGTCCCGTACGCACGGACAAGCCCAGCCAAGCGTGCTCCCAGCGCATGGACGGGCTTC
TATTTTTCCCAGCCCACCACACGCTCGTAGAATGGACCATGTCCACAAAGCCAATGGCAATCTTCACTCGAGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis