Browse Element(s) Details


OsAffx.12228.1.S1_at

Description tigr:9630.m02618
TID=OsAffx.12228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2755011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27520Os.14919.1.S1_at4/112+16284176..16289612transposon protein, putative, Mutator sub-class
LOC_Os02g27520Os.56216.1.S1_at2/112+16284176..16289612transposon protein, putative, Mutator sub-class
LOC_Os02g27520OsAffx.29313.1.S1_at1/112+16284176..16289612transposon protein, putative, Mutator sub-class
LOC_Os02g27530NANA2+16291477..16294253retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27540OsAffx.24458.2.S1_at11/112+16306055..16309173NB-ARC domain containing protein
LOC_Os02g27550OsAffx.12228.1.S1_at11/112+16314214..16314507hypothetical protein
LOC_Os02g27560OsAffx.24459.1.S1_at11/112+16315482..16316631hypothetical protein
LOC_Os02g27570OsAffx.29412.1.S1_at1/112+16318446..16323865retrotransposon protein, putative, unclassified
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12228.1.S1_at--988--4391Chr02:16314453..16314477 (25 bp)
GCCACGATAGCCATGACCGCGCTGG
LOC_Os02g27550
OsAffx.12228.1.S1_at--74--2751Chr02:16314399..16314423 (25 bp)
AAGAAGAAGGCGTCCGACACGCTAG
LOC_Os02g27550
OsAffx.12228.1.S1_at--440--1471Chr02:16314395..16314419 (25 bp)
AGAAGGCGTCCGACACGCTAGCGGA
LOC_Os02g27550
OsAffx.12228.1.S1_at--121--1851Chr02:16314381..16314405 (25 bp)
ACGCTAGCGGAGGACGTGGCTTTCA
LOC_Os02g27550
OsAffx.12228.1.S1_at--184--3991Chr02:16314367..16314391 (25 bp)
CGTGGCTTTCATCAAGAAGGATCTT
LOC_Os02g27550
OsAffx.12228.1.S1_at--59--371Chr02:16314357..16314381 (25 bp)
ATCAAGAAGGATCTTGAGTTCATGG
LOC_Os02g27550
OsAffx.12228.1.S1_at--24--1831Chr02:16314308..16314332 (25 bp)
ACGCCGAGAAGCGTAGCCACACCCA
LOC_Os02g27550
OsAffx.12228.1.S1_at--646--4091Chr02:16314266..16314290 (25 bp)
CGACTCCCTCCAAGAGTTTGAGAAC
LOC_Os02g27550
OsAffx.12228.1.S1_at--801--9311Chr02:16314262..16314286 (25 bp)
TCCCTCCAAGAGTTTGAGAACCTGG
LOC_Os02g27550
OsAffx.12228.1.S1_at--496--5971Chr02:16314247..16314271 (25 bp)
GAGAACCTGGTTGCGACACATCCGC
LOC_Os02g27550
OsAffx.12228.1.S1_at--443--2631Chr02:16314244..16314268 (25 bp)
AACCTGGTTGCGACACATCCGCGGC
LOC_Os02g27550
Target Sequence 
GCCACGATAGCCATGACCGCGCTGGTGTTGACGGAGCTGCACCGGATGAGGGACAAGAAGAAGGCGTCCGACACGCTAGC
GGAGGACGTGGCTTTCATCAAGAAGGATCTTGAGTTCATGGAGTCATTCCTGGCGGATGCCGCCGACGCCGAGAAGCGTA
GCCACACCCACCACACGACGACGACGACGACTCCCTCCAAGAGTTTGAGAACCTGGTTGCGACACATCCGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis