Browse Element(s) Details


OsAffx.24461.1.S1_at

Description tigr:9630.m02622
TID=OsAffx.24461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2759011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27540OsAffx.24458.2.S1_at11/112+16306055..16309173NB-ARC domain containing protein
LOC_Os02g27550OsAffx.12228.1.S1_at11/112+16314214..16314507hypothetical protein
LOC_Os02g27560OsAffx.24459.1.S1_at11/112+16315482..16316631hypothetical protein
LOC_Os02g27570OsAffx.29412.1.S1_at1/112+16318446..16323865retrotransposon protein, putative, unclassified
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein
LOC_Os02g27600OsAffx.24462.1.S1_at11/112+16350227..16351996hypothetical protein
LOC_Os02g27610OsAffx.24463.1.S1_at11/112+16353155..16353574hypothetical protein
LOC_Os02g27620OsAffx.2768.1.S1_x_at11/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27620Os.18140.1.S1_at9/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24461.1.S1_at--616--9491Chr02:16333335..16333359 (25 bp)
TCTCCAGTGCACAATGATACCTACA
LOC_Os02g27590
OsAffx.24461.1.S1_at--879--1111Chr02:16333330..16333354 (25 bp)
AGTGCACAATGATACCTACAAGTTC
LOC_Os02g27590
OsAffx.24461.1.S1_at--400--2232Chr06:29918026..29918048 (22 bp)
ACAATGATACCTACAAGTTCATCAG
NONE
OsAffx.24461.1.S1_at--98--2351Chr02:16333179..16333279 (25 bp)
AAAGCATGAGAGCTCATCTTCCCAA
LOC_Os02g27590
OsAffx.24461.1.S1_at--933--692Chr08:6314461..6314486 (25 bp)
ATGAGAGCTCATCTTCCCAAATGGA
NONE
OsAffx.24461.1.S1_at--626--1352Chr08:6314461..6314481 (21 bp)
AGAGCTCATCTTCCCAAATGGAGTC
NONE
OsAffx.24461.1.S1_at--213--9571Chr02:16333163..16333187 (25 bp)
TCTTCCCAAATGGAGTCACCTCAAG
LOC_Os02g27590
OsAffx.24461.1.S1_at--842--6091Chr02:16333151..16333175 (25 bp)
GAGTCACCTCAAGATATTCAGAGCA
LOC_Os02g27590
OsAffx.24461.1.S1_at--686--6511Chr02:16332937..16333163 (25 bp)
GATATTCAGAGCATTTCTACTGCAG
LOC_Os02g27590
OsAffx.24461.1.S1_at--518--5931Chr02:16332929..16333155 (25 bp)
GAGCATTTCTACTGCAGTGAACATT
LOC_Os02g27590
OsAffx.24461.1.S1_at--77--10571Chr02:16332923..16332947 (25 bp)
TTCTACTGCAGTGAACATTGCAGGG
LOC_Os02g27590
Target Sequence 
TCTCCAGTGCACAATGATACCTACAAGTTCATCAGATTTCAGGATGAGAAGATTAGCGCCTATATATTATCCAATAAAAT
AAAGCATGAGAGCTCATCTTCCCAAATGGAGTCACCTCAAGATATTCAGAGCATTTCTACTGCAGTGAACATTGCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis