Browse Element(s) Details


Os.18140.1.S1_at

Description gb:AK067614.1
DB_XREF= gi:32977632
TID=Os.18140.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108P21, full insert sequence.
FL= gb:AK067614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g276209/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein
LOC_Os02g27600OsAffx.24462.1.S1_at11/112+16350227..16351996hypothetical protein
LOC_Os02g27610OsAffx.24463.1.S1_at11/112+16353155..16353574hypothetical protein
LOC_Os02g27620OsAffx.2768.1.S1_x_at11/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27620Os.18140.1.S1_at9/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27630Os.46995.1.S1_x_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27630Os.46995.1.S1_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27640OsAffx.22722.1.S1_x_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27640OsAffx.22722.1.S1_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18140.1.S1_at--18--5011NONE
GCATGGCTAAAGGTCTCTCCAGCAG
NONE
Os.18140.1.S1_at--571--7151Chr02:16354707..16354731 (25 bp)
GTCTCTCCAGCAGTCGGCATAATAT
LOC_Os02g27620
Os.18140.1.S1_at--932--9731Chr02:16354688..16354712 (25 bp)
TAATATCTCCGGGACAGACGGTAGA
LOC_Os02g27620
Os.18140.1.S1_at--524--7851Chr02:16354669..16354693 (25 bp)
GGTAGAGGTCACTTTGCAGCACAGA
LOC_Os02g27620
Os.18140.1.S1_at--862--5111Chr02:16354651..16354675 (25 bp)
GCACAGAGACCTGCATAGCCAACAA
LOC_Os02g27620
Os.18140.1.S1_at--453--5471Chr02:16354616..16354640 (25 bp)
GAACTTCATTGGATATTTTGCCTGG
LOC_Os02g27620
Os.18140.1.S1_at--672--10191Chr02:16354603..16354627 (25 bp)
TATTTTGCCTGGTGGAGCTACCCAA
LOC_Os02g27620
Os.18140.1.S1_at--992--8071Chr02:16354590..16354614 (25 bp)
GGAGCTACCCAACAAAAGGCAGCAA
LOC_Os02g27620
Os.18140.1.S1_at--154--2471Chr02:16354502..16354526 (25 bp)
AACACCAGAACTGCAGGAGCACATT
LOC_Os02g27620
Os.18140.1.S1_at--530--5111Chr02:16354484..16354508 (25 bp)
GCACATTGCCATCGAGAGGTTATAA
LOC_Os02g27620
Os.18140.1.S1_at--30--8951NONE
TGACGAGATCGACCCAACAAACATA
NONE
Target Sequence 
GCATGGCTAAAGGTCTCTCCAGCAGTCGGCATAATATCTCCGGGACAGACGGTAGAGGTCACTTTGCAGCACAGAGACCT
GCATAGCCAACAAAACTATAATGGAACTTCATTGGATATTTTGCCTGGTGGAGCTACCCAACAAAAGGCAGCAACTGTNT
TTGCGAAAATAACTGGAGTATATTCAACAGTTGCAAAATATTACGAAATACATGNACAACACCAGAACTGCAGGAGCACA
TTGCCATCGAGAGGTTATAACTTAGGTGACCGGTTTTTTTAATTTTGAGTTTGGTATCAGGAATTTANGAAATGTATGNT
GNATCAAATGNTCTTTTTGAGTGAAGTCACAAAATCAANGGCTTTCTACTACCCNTCAACATGTGTATTTTNCAAGAGAG
GAAAATTGTAAACAGTGTAGCATACAACAGNCCAAATTTTCTACTGGGTTTCGGNGNGGAAAGATGCCGTCTTTTCGTAN
GGNTTTCGNGGTTGACGAGATCGACCCAACAAACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis