Browse Element(s) Details


OsAffx.24462.1.S1_at

Description tigr:9630.m02623
TID=OsAffx.24462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2760011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein
LOC_Os02g27600OsAffx.24462.1.S1_at11/112+16350227..16351996hypothetical protein
LOC_Os02g27610OsAffx.24463.1.S1_at11/112+16353155..16353574hypothetical protein
LOC_Os02g27620OsAffx.2768.1.S1_x_at11/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27620Os.18140.1.S1_at9/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27630Os.46995.1.S1_x_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27630Os.46995.1.S1_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27640OsAffx.22722.1.S1_x_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27640OsAffx.22722.1.S1_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24462.1.S1_at--39--752Chr02:16350258..16350282 (25 bp)
ATGTCCAGGGTGAGCCAGTACTCGA
LOC_Os02g27600
OsAffx.24462.1.S1_at--1150--1993Chr02:16350277..16350301 (25 bp)
ACTCGACGCTGTGCTGCAGGTTCAG
LOC_Os02g27600
OsAffx.24462.1.S1_at--877--4353Chr12:1174364..1174383 (20 bp)
CCAGCATGCCGAAGTGGAACTCCGG
NONE
OsAffx.24462.1.S1_at--731--773Chr02:16351846..16351870 (25 bp)
ATGTGCGAAGGGTCAGCTGGCCCAT
LOC_Os02g27600
OsAffx.24462.1.S1_at--629--7812Chr02:16351856..16351880 (25 bp)
GGTCAGCTGGCCCATGAAAACGAAC
LOC_Os02g27600
OsAffx.24462.1.S1_at--325--5531Chr02:16351871..16351895 (25 bp)
GAAAACGAACAGATCTCAGAGCATA
LOC_Os02g27600
OsAffx.24462.1.S1_at--547--5932Chr02:16351889..16351913 (25 bp)
GAGCATATCAGTGATATCCCACGAG
LOC_Os02g27600
OsAffx.24462.1.S1_at--363--6511Chr02:16351901..16351925 (25 bp)
GATATCCCACGAGAAATCTGTCGAC
LOC_Os02g27600
OsAffx.24462.1.S1_at--622--472Chr02:16351916..16351940 (25 bp)
ATCTGTCGACAGACGTTTAGCAAAA
LOC_Os02g27600
OsAffx.24462.1.S1_at--696--5751Chr02:16351927..16351951 (25 bp)
GACGTTTAGCAAAATCACAGGTTAT
LOC_Os02g27600
OsAffx.24462.1.S1_at--196--3311Chr02:16351942..16351966 (25 bp)
CACAGGTTATAATGCATCCCTTTGC
LOC_Os02g27600
Target Sequence 
ATGTCCAGGGTGAGCCAGTACTCGACGCTGTGCTGCAGGTTCAGGCCGCCCGGGTAGCACGGCGCACCGCTCGCCGATCA
TGTCCGGCCACGCCGCGCCGGCCGCCTTGCCGTCCCACCCCAGCATGCCGAAGTGGAACTCCGGCGGGAGGTCGTAGAGG
CCCATGTGCGAAGGGTCAGCTGGCCCATGAAAACGAACAGATCTCAGAGCATATCAGTGATATCCCACGAGAAATCTGTC
GACAGACGTTTAGCAAAATCACAGGTTATAATGCATCCCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis