Browse Element(s) Details


OsAffx.2768.1.S1_x_at

Description tigr:9630.m02625
TID=OsAffx.2768.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to inositol 1,4,5-trisphosphate 5-phosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2762011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein
LOC_Os02g27600OsAffx.24462.1.S1_at11/112+16350227..16351996hypothetical protein
LOC_Os02g27610OsAffx.24463.1.S1_at11/112+16353155..16353574hypothetical protein
LOC_Os02g27620OsAffx.2768.1.S1_x_at11/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27620Os.18140.1.S1_at9/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27630Os.46995.1.S1_x_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27630Os.46995.1.S1_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27640OsAffx.22722.1.S1_x_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27640OsAffx.22722.1.S1_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2768.1.S1_x_at--325--4951Chr02:16355802..16355826 (25 bp)
GCATTCCTGCCTGGTGTGACAGAAT
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--239--5271Chr02:16355781..16355805 (25 bp)
GAATCCTATATCGTGATAGCCGAGT
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--1143--691Chr02:16355745..16355769 (25 bp)
ATGAGTGTTCCTTGGATTGTCCTGT
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--375--7932Chr04:32104720..32105147 (25 bp)
GGATTGTCCTGTGGTTTCTTCAATA
NONE
OsAffx.2768.1.S1_x_at--481--10171Chr02:16355629..16355733 (25 bp)
TATCACTGTATGACTCTTGCATGGA
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--638--8611Chr02:16355488..16355512 (25 bp)
TGGTGCATTTGCTTCAGGAACTTGA
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--914--5471Chr02:16355471..16355495 (25 bp)
GAACTTGAAGCATTCCCTGGAGTAA
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--1158--6391Chr02:16355417..16355441 (25 bp)
GATCGGAATCCATCTGTTGTGAAAT
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--685--5331Chr02:16355378..16355402 (25 bp)
GAAGTCATCGCTTGTTTTGAGATCA
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--828--3111Chr02:16355339..16355363 (25 bp)
AATTTGTCCAGCACACATTTCTCTG
LOC_Os02g27620
OsAffx.2768.1.S1_x_at--209--9491Chr02:16355318..16355342 (25 bp)
TCTGCTTTTCCTGCATGGCTAAAGG
LOC_Os02g27620
Target Sequence 
GCATTCCTGCCTGGTGTGACAGAATCCTATATCGTGATAGCCGAGTTAGTTCAGGGAATGAGTGTTCCTTGGATTGTCCT
GTGGTTTCTTCAATATCACTGTATGACTCTTGCATGGAAGCAACAGATAGTGATCACAAACCTATAAAATCTGTGTTCAA
TTTGGATATTGCTTATGTTGACAAACAGACAATGAGGCAGAAATATGTGGAGCTAATGAGCTCAAATAATAAAGTGGTGC
ATTTGCTTCAGGAACTTGAAGCATTCCCTGGAGTAAATATAAATAATTCTAACATCATCTTGCAAGATCGGAATCCATCT
GTTGTGAAATTGCAAAACAGAACAGAAGTCATCGCTTGTTTTGAGATCATTGGACAAGCACCAAATTTGTCCAGCACACA
TTTCTCTGCTTTTCCTGCATGGCTAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2768.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis