Browse Element(s) Details


OsAffx.24463.1.S1_at

Description tigr:9630.m02624
TID=OsAffx.24463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2761011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27580OsAffx.24460.1.S1_at11/112+16329284..16329888hypothetical protein
LOC_Os02g27590OsAffx.24461.1.S1_at11/112+16332893..16333886hypothetical protein
LOC_Os02g27600OsAffx.24462.1.S1_at11/112+16350227..16351996hypothetical protein
LOC_Os02g27610OsAffx.24463.1.S1_at11/112+16353155..16353574hypothetical protein
LOC_Os02g27620OsAffx.2768.1.S1_x_at11/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27620Os.18140.1.S1_at9/112+16354213..16358456Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os02g27630Os.46995.1.S1_x_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27630Os.46995.1.S1_at1/112+16368113..16371033retrotransposon protein, putative, unclassified
LOC_Os02g27640OsAffx.22722.1.S1_x_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27640OsAffx.22722.1.S1_at2/112+16371367..16374250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g27650OsAffx.1646.1.S1_x_at1/112+16374532..16377496retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24463.1.S1_at--482--8491Chr02:16353453..16353477 (25 bp)
TGGACCGAACGGTTGCTATCGTGGA
LOC_Os02g27610
OsAffx.24463.1.S1_at--54--3491Chr02:16353418..16353442 (25 bp)
CAGGAAGCAGCCGTTGAGGAGATCC
LOC_Os02g27610
OsAffx.24463.1.S1_at--278--6231Chr02:16353388..16353412 (25 bp)
GATGGCGATGAAGACAGTGCTATTG
LOC_Os02g27610
OsAffx.24463.1.S1_at--1142--8971Chr02:16353336..16353360 (25 bp)
TGAACCACTCTCGTGACATCGAAAA
LOC_Os02g27610
OsAffx.24463.1.S1_at--167--5531Chr02:16353316..16353340 (25 bp)
GAAAAGCTCGTCCACCTAGAGATAA
LOC_Os02g27610
OsAffx.24463.1.S1_at--572--2251Chr02:16353293..16353317 (25 bp)
AAATTATTCAGTCTATGGCCGTATC
LOC_Os02g27610
OsAffx.24463.1.S1_at--838--851Chr02:16353279..16353303 (25 bp)
ATGGCCGTATCTTACGTCACGAAGG
LOC_Os02g27610
OsAffx.24463.1.S1_at--733--2911Chr02:16353258..16353282 (25 bp)
AAGGACGGCTTTTGACTGCCGCTGA
LOC_Os02g27610
OsAffx.24463.1.S1_at--211--4531Chr02:16353241..16353265 (25 bp)
GCCGCTGACCACACCTGTGAGGAGT
LOC_Os02g27610
OsAffx.24463.1.S1_at--471--8891Chr02:16353224..16353248 (25 bp)
TGAGGAGTGGCACCCTGAAGACAAT
LOC_Os02g27610
OsAffx.24463.1.S1_at--1--5591Chr02:16353205..16353229 (25 bp)
GACAATAGGACGACAGCAGTTGCAA
LOC_Os02g27610
Target Sequence 
TGGACCGAACGGTTGCTATCGTGGAGGGGCGCAACCAGGAAGCAGCCGTTGAGGAGATCCAAGGCGATGGCGATGAAGAC
AGTGCTATTGGCGGGAGCGCGCTTGGGCGGCGCTCCCTGAACCACTCTCGTGACATCGAAAAGCTCGTCCACCTAGAGAT
AAATTATTCAGTCTATGGCCGTATCTTACGTCACGAAGGACGGCTTTTGACTGCCGCTGACCACACCTGTGAGGAGTGGC
ACCCTGAAGACAATAGGACGACAGCAGTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis