Browse Element(s) Details


OsAffx.1225.1.S1_at

Description gb:NM_188868.1
DB_XREF= gi:34904819
GEN=OJ1484_G09.3
TID=OsAffx.1225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.3 (OJ1484_G09.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2767411/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27630OsAffx.5963.1.S1_at3/118+16701335..16706445retrotransposon protein, putative, unclassified, expressed
LOC_Os08g27640NANA8+16712191..16714505hypothetical protein
LOC_Os08g27650NANA8+16716705..16720051transposon protein, putative, unclassified
LOC_Os08g27660OsAffx.22023.1.S1_x_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27660OsAffx.22023.1.S1_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27674OsAffx.17193.2.S1_s_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.1.S1_x_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.1225.1.S1_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.2.S1_x_at10/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8371.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8372.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27690OsAffx.22022.1.S1_at2/118+16739537..16739791hypothetical protein
LOC_Os08g27700OsAffx.17195.1.S1_at11/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_at9/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_x_at8/118+16740754..16743564expressed protein
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1225.1.S1_at--197--4651Chr08:16735596..16735620 (25 bp)
GCGTCCGTTACTGACACCATAGTGT
LOC_Os08g27674
OsAffx.1225.1.S1_at--797--6771Chr08:16735590..16735614 (25 bp)
GTTACTGACACCATAGTGTGCCACT
LOC_Os08g27674
OsAffx.1225.1.S1_at--1161--5631Chr08:16735584..16735608 (25 bp)
GACACCATAGTGTGCCACTGTCGAT
LOC_Os08g27674
OsAffx.1225.1.S1_at--358--1111Chr08:16735576..16735600 (25 bp)
AGTGTGCCACTGTCGATGCCCTTGT
LOC_Os08g27674
OsAffx.1225.1.S1_at--342--9171Chr08:16735518..16735542 (25 bp)
TGCCCTCATCTATTGTTGGTGCCAC
LOC_Os08g27674
OsAffx.1225.1.S1_at--1060--10211Chr08:16735508..16735532 (25 bp)
TATTGTTGGTGCCACCGTCCTTGTC
LOC_Os08g27674
OsAffx.1225.1.S1_at--282--8711Chr08:16735487..16735511 (25 bp)
TGTCCTCATTTGTTGCAGCTGCCGA
LOC_Os08g27674
OsAffx.1225.1.S1_at--463--211Chr08:16735480..16735504 (25 bp)
ATTTGTTGCAGCTGCCGACTCCCTC
LOC_Os08g27674
OsAffx.1225.1.S1_at--901--7231Chr08:16735436..16735460 (25 bp)
GTCGCCTCCATCAGTCACTGCTGTT
LOC_Os08g27674
OsAffx.1225.1.S1_at--354--411Chr08:16735427..16735451 (25 bp)
ATCAGTCACTGCTGTTGCGCTCGTC
LOC_Os08g27674
OsAffx.1225.1.S1_at--686--5891Chr08:16735332..16735356 (25 bp)
GAGCTGGCGACCACCGAGCATAAAG
LOC_Os08g27674
Target Sequence 
GCGTCCGTTACTGACACCATAGTGTGCCACTGTCGATGCCCTTGTCCTCGTCCGTCGTGTCCTCCACCGCGCTGCCGCTG
CCCTCATCTATTGTTGGTGCCACCGTCCTTGTCCTCATTTGTTGCAGCTGCCGACTCCCTCGTCCTCTTCCACCGCGCTC
GTCGCCTCCATCAGTCACTGCTGTTGCGCTCGTCCTCCGTGTCCTCTGCCACCGCCGCCATCATCCACCATGACCGCTGC
AGCCAGCGCTATCACCGTCTTCTCGAGCTGGCGACCACCGAGCATAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis