Browse Element(s) Details


OsAffx.12264.1.S1_at

Description tigr:9630.m02773
TID=OsAffx.12264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2907011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29030OsAffx.12265.1.S1_at2/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030Os.45957.4.S1_x_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.15272.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29030OsAffx.24489.1.S1_at1/112+17172159..17187680retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g29040Os.40093.1.S1_at11/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29040Os.40093.2.S1_x_at10/112+17190272..17198761Ankyrin-2, putative, expressed
LOC_Os02g29050NANA2+17203880..17205976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29060NANA2+17207503..17208818retrotransposon protein, putative, unclassified
LOC_Os02g29070OsAffx.12264.1.S1_at11/112+17211664..17212593Protein kinase domain containing protein
LOC_Os02g29080OsAffx.24488.1.S1_at11/112+17214377..17214919hypothetical protein
LOC_Os02g29080OsAffx.30320.1.S1_x_at1/112+17214377..17214919hypothetical protein
LOC_Os02g29090Os.55156.1.S1_at11/112+17217744..17221458expressed protein
LOC_Os02g29100OsAffx.24489.1.S1_at11/112+17223153..17227085Heat shock protein STI, putative
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12264.1.S1_at--989--9211Chr02:17211998..17212022 (25 bp)
TCCTTGTCAAAGAGTTCGTCGGCGC
LOC_Os02g29070
OsAffx.12264.1.S1_at--590--9631Chr02:17212118..17212142 (25 bp)
TCAGGACAATGCATGCCGCCGGCAT
LOC_Os02g29070
OsAffx.12264.1.S1_at--772--8351Chr02:17212186..17212210 (25 bp)
GGCGGTGCGCTCAAGATATGTGACT
LOC_Os02g29070
OsAffx.12264.1.S1_at--55--7371Chr02:17212205..17212229 (25 bp)
GTGACTTCGGGATGGCAACCACGGC
LOC_Os02g29070
OsAffx.12264.1.S1_at--807--1871Chr02:17212241..17212265 (25 bp)
ACGAGGGATTCATGGTCGGCACGCT
LOC_Os02g29070
OsAffx.12264.1.S1_at--526--2471Chr02:17212273..17212297 (25 bp)
AACACACCGGAGCAGCTCGCTGGAA
LOC_Os02g29070
OsAffx.12264.1.S1_at--650--1151Chr02:17212304..17212328 (25 bp)
AGTACAACGCCCAGGCCGTGGACAT
LOC_Os02g29070
OsAffx.12264.1.S1_at--1081--3791Chr02:17212456..17212480 (25 bp)
CTCGCCGGCTTACTTCATGATAGAA
LOC_Os02g29070
OsAffx.12264.1.S1_at--385--7071Chr02:17212501..17212525 (25 bp)
GTAAGGCGTCGTCAAGATCGAACAC
LOC_Os02g29070
OsAffx.12264.1.S1_at--315--6391Chr02:17212516..17212540 (25 bp)
GATCGAACACCATTGCATGTCATGA
LOC_Os02g29070
OsAffx.12264.1.S1_at--206--7131Chr02:17212534..17212558 (25 bp)
GTCATGAACCGATTCTTGTGCTATA
LOC_Os02g29070
Target Sequence 
TCCTTGTCAAAGAGTTCGTCGGCGCCCGCAGCCTCCGCGACCTCATCGCCGGCCATGCCCGTCGTCGTCCCTTCTCCGAA
GGCGAGACCCGCGCACTGATGCGGCAGCTCCGCGCCGGCGTCAGGACAATGCATGCCGCCGGCATAGCCCACCGCGACAT
CAAGCCACGCAACATCCTCATCGGCCCGGGCGGTGCGCTCAAGATATGTGACTTCGGGATGGCAACCACGGCGGCGCCGC
CCTACGAGGGATTCATGGTCGGCACGCTCCACTACAACACACCGGAGCAGCTCGCTGGAAAGGGCCAGTACAACGCCCAG
GCCGTGGACATGTGGGCGCTGGGCGAGGTACTCGCCGGACTGCTGGCCTTCTACGACGACGAGCGGATGATGGCGGAGGC
GGCGCTAGAGCACCGGTGGTTCATGGAGGAGGCCGACTCCCCCACCGTCCTGGAGGGCCTCGCCGGCTTACTTCATGATA
GAAGATTTAGAGTAGAAGCAATTGTAAGGCGTCGTCAAGATCGAACACCATTGCATGTCATGAACCGATTCTTGTGCTAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis