Browse Element(s) Details


OsAffx.12357.1.S1_at

Description tigr:9630.m03339
TID=OsAffx.12357.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3503911/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12357.1.S1_at--1154--6831Chr02:21024503..21024913 (25 bp)
GTTTCTGCTGTGGTACCATTCATTA
LOC_Os02g35039
OsAffx.12357.1.S1_at--134--7511Chr02:21024900..21024922 (23 bp)
GTGGTACCATTCATTAGACTACTAG
LOC_Os02g35039
OsAffx.12357.1.S1_at--786--1371Chr02:21024913..21024937 (25 bp)
AGACTACTAGACTTGAAACTACCAA
LOC_Os02g35039
OsAffx.12357.1.S1_at--552--3231Chr02:21025241..21025261 (21 bp)
CAAGAGGTTCTATGAGCACTGGATT
LOC_Os02g35039
OsAffx.12357.1.S1_at--266--8511Chr02:21025273..21025297 (25 bp)
TGGAAATATTTCCACTTCGTGTTAA
LOC_Os02g35039
OsAffx.12357.1.S1_at--476--2371Chr02:21025296..21025320 (25 bp)
AAACCTTTTATCATCATCCCTGGAA
LOC_Os02g35039
OsAffx.12357.1.S1_at--414--531Chr02:21025311..21025335 (25 bp)
ATCCCTGGAACACCGTTGATACCTT
LOC_Os02g35039
OsAffx.12357.1.S1_at--45--3131Chr02:21025339..21025363 (25 bp)
AATTTATTATGCACCGATACTCTAA
LOC_Os02g35039
OsAffx.12357.1.S1_at--390--1411Chr02:21027399..21027423 (25 bp)
AGACATACCGGCGTCGGTCTTTGAG
LOC_Os02g35039
OsAffx.12357.1.S1_at--829--9431Chr02:21027412..21027436 (25 bp)
TCGGTCTTTGAGCTTGATGCGGCCA
LOC_Os02g35039
OsAffx.12357.1.S1_at--342--10271Chr02:21027418..21027442 (25 bp)
TTTGAGCTTGATGCGGCCATGGCGA
LOC_Os02g35039
Target Sequence 
GTTTCTGCTGTGGTACCATTCATTAGACTACTAGACTTGAAACTACCAAGAGGTTCTATGAGCACTGGATTAATTAGTAT
GATGGAAATATTTCCACTTCGTGTTAAACCTTTTATCATCATCCCTGGAACACCGTTGATACCTTTTAAATTTATTATGC
ACCGATACTCTAATAAGGTATCATGTGTTGGAGGCTTTGGCTCAAATTCTTACATGTACAAAATTAATGGAACTGCAAAC
ATCAATGCCATCAGTGTTGCAGCTGAGAAAGGTATTAAGAGATTTGTGTATGTGTCAGCAGCGGACTTTGGTTTTGTGAA
CTACTTGTTGCAAGGTTATTATGAGGGCAAGGGGTTGAACTACCTCATGGAGATAAAGATGATTGACTTAGGGAGTGAAC
GGGGAAGGGGAGAGAGAGAGACATACCGGCGTCGGTCTTTGAGCTTGATGCGGCCATGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis