Browse Element(s) Details


OsAffx.12377.1.S1_at

Description tigr:9630.m03511
TID=OsAffx.12377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g367607/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36700Os.26352.1.S1_at11/112+22140560..22144278sucrose transporter BoSUT1, putative, expressed
LOC_Os02g36710Os.6793.1.S1_at11/112+22145697..22150173Nucleosome assembly protein containing protein, expressed
LOC_Os02g36720OsAffx.2884.1.S1_at10/112+22151324..22152489hypothetical protein
LOC_Os02g36730OsAffx.2885.1.S1_at11/112+22155458..22155790hypothetical protein
LOC_Os02g36740Os.18677.1.S1_at9/112+22157430..22161437zinc finger family protein, putative, expressed
LOC_Os02g36749NANA2+22163468..22164283hypothetical protein
LOC_Os02g36760OsAffx.12377.1.S1_at7/112+22166797..22167042hypothetical protein
LOC_Os02g36770OsAffx.24601.1.S1_at11/112+22168446..22172832Galactosyltransferase family protein, expressed
LOC_Os02g36780NANA2+22174302..22175150mTERF family protein, expressed
LOC_Os02g36790NANA2+22178949..22183425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36800OsAffx.22947.5.S1_x_at3/112+22187498..22193431retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12377.1.S1_at--673--9551Chr02:22167079..22167103 (25 bp)
TCTTTGTCTCTTTCCTGCGCAGGCA
NONE
OsAffx.12377.1.S1_at--633--5011Chr02:22167061..22167085 (25 bp)
GCAGGCACTTGCATCAGCCAGCGAA
NONE
OsAffx.12377.1.S1_at--967--391Chr02:22167049..22167073 (25 bp)
ATCAGCCAGCGAACAAAGCGGAGTT
NONE
OsAffx.12377.1.S1_at--333--1631Chr02:22167033..22167057 (25 bp)
AGCGGAGTTGACACGATGGCTGACA
NONE
OsAffx.12377.1.S1_at--666--9571Chr02:22166979..22167003 (25 bp)
TCTTCGGCAAGGTCTCATGGCACAA
LOC_Os02g36760
OsAffx.12377.1.S1_at--30--9631Chr02:22166965..22166989 (25 bp)
TCATGGCACAACTCGACGTCAAGGA
LOC_Os02g36760
OsAffx.12377.1.S1_at--66--1891Chr02:22166929..22166953 (25 bp)
ACGATGGGTCCCATGTAGATCTGGA
LOC_Os02g36760
OsAffx.12377.1.S1_at--198--10031Chr02:22166914..22166938 (25 bp)
TAGATCTGGAGGTGACGCGGCTTCC
LOC_Os02g36760
OsAffx.12377.1.S1_at--27--7371Chr02:22166876..22166900 (25 bp)
GTGACAACAACGTAGCTGAGGGCTG
LOC_Os02g36760
OsAffx.12377.1.S1_at--566--3251Chr02:22166869..22166893 (25 bp)
CAACGTAGCTGAGGGCTGGCAACGA
LOC_Os02g36760
OsAffx.12377.1.S1_at--40--7651Chr02:22166827..22166851 (25 bp)
GGGAGAGTGGTTATTGCTTGCTTCA
LOC_Os02g36760
Target Sequence 
TCTTTGTCTCTTTCCTGCGCAGGCACTTGCATCAGCCAGCGAACAAAGCGGAGTTGACACGATGGCTGACAGGAGCAGCG
GGGGCATCCTCCCGTGCCGCTCTTCGGCAAGGTCTCATGGCACAACTCGACGTCAAGGAGTTGGAGGAAGACGATGGGTC
CCATGTAGATCTGGAGGTGACGCGGCTTCCATTCGCCCGAGCAGTGACAACAACGTAGCTGAGGGCTGGCAACGATGGGG
TGATGAAGCTCTGGGAGAGTGGTTATTGCTTGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis