Browse Element(s) Details


OsAffx.12379.1.S1_at

Description tigr:9630.m03520
TID=OsAffx.12379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3685011/11Oxygen evolving enhancer protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36820OsAffx.24604.1.S1_at11/112+22205122..22205859hypothetical protein
LOC_Os02g36820Os.51364.1.A1_at2/112+22205122..22205859hypothetical protein
LOC_Os02g36830NANA2+22209370..22212603UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os02g36840Os.54475.1.S1_at11/112+22223706..22225554Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g36850OsAffx.12379.1.S1_at11/112+22228630..22229486Oxygen evolving enhancer protein 3, putative, expressed
LOC_Os02g36860OsAffx.12380.1.S1_at11/112+22231145..22231534hypothetical protein
LOC_Os02g36870Os.11959.1.S1_at11/112+22239136..22241669expressed protein
LOC_Os02g36880Os.9492.1.S1_a_at11/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36880Os.51926.1.S1_x_at1/112+22252971..22254789No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12379.1.S1_at--1148--1471Chr02:22229095..22229119 (25 bp)
AGCGGTTCTTCGAGCCCGGGCTGAC
LOC_Os02g36850
OsAffx.12379.1.S1_at--179--7991Chr02:22229029..22229053 (25 bp)
GGATGCGCACGCTGCGGCCCATGCT
LOC_Os02g36850
OsAffx.12379.1.S1_at--684--611Chr02:22229009..22229033 (25 bp)
ATGCTGGAGACCATGTCGTGGAAGT
LOC_Os02g36850
OsAffx.12379.1.S1_at--668--7191Chr02:22228995..22229019 (25 bp)
GTCGTGGAAGTACGTGCTGTTCTAC
LOC_Os02g36850
OsAffx.12379.1.S1_at--876--2831Chr02:22228988..22229012 (25 bp)
AAGTACGTGCTGTTCTACGTGCGCC
LOC_Os02g36850
OsAffx.12379.1.S1_at--1014--9531Chr02:22228975..22228999 (25 bp)
TCTACGTGCGCCTCAAGTCCAAGTA
LOC_Os02g36850
OsAffx.12379.1.S1_at--1117--7231Chr02:22228883..22228907 (25 bp)
GTCGCCAACGAGCTCGTCGATAACA
LOC_Os02g36850
OsAffx.12379.1.S1_at--535--7211Chr02:22228722..22228892 (25 bp)
GTCGATAACATGACCGAGTTCGATC
LOC_Os02g36850
OsAffx.12379.1.S1_at--492--1231Chr02:22228706..22228730 (25 bp)
AGTTCGATCGGTTCGTGCGGACGCC
LOC_Os02g36850
OsAffx.12379.1.S1_at--843--6971Chr02:22228675..22228699 (25 bp)
GTACGAGTCGTACCTCTACTACGAG
LOC_Os02g36850
OsAffx.12379.1.S1_at--815--6971Chr02:22228666..22228690 (25 bp)
GTACCTCTACTACGAGAAGACTCTC
LOC_Os02g36850
Target Sequence 
AGCGGTTCTTCGAGCCCGGGCTGACCGCCGAGGAGGCCGCGGCGCGCATCCGGCAGACGGCGGAGGGGATGCGCACGCTG
CGGCCCATGCTGGAGACCATGTCGTGGAAGTACGTGCTGTTCTACGTGCGCCTCAAGTCCAAGTACCTCGACCTCGACCT
CACCACCGCCATGTTCGGCGTCCCCGAGGCCCGCCGCGCCGACTACGTCCGCGTCGCCAACGAGCTCGTCGATAACATGA
CCGAGTTCGATCGGTTCGTGCGGACGCCCAAGGTGTACGAGTCGTACCTCTACTACGAGAAGACTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis