Browse Element(s) Details


OsAffx.12393.1.S1_x_at

Description tigr:9630.m03664
TID=OsAffx.12393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3817011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38150OsAffx.5106.1.S1_at2/112+23067758..23068544hypothetical protein
LOC_Os02g38160Os.9993.1.S1_at11/112+23077237..23080571glycosyl transferase family 17 protein, putative, expressed
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12393.1.S1_x_at--498--4671Chr02:23092240..23092264 (25 bp)
GCGTGGCACGCGCAGTCGGGCAACC
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--250--5031Chr02:23092251..23092275 (25 bp)
GCAGTCGGGCAACCCGCGCGCGGTG
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--796--8351Chr02:23092318..23092342 (25 bp)
GGCGGCGTCTCTTCCTCGGGCACGC
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--63--1951Chr02:23092368..23092392 (25 bp)
ACGGCGCAGGCCGTCACGGTTCAAG
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--1143--4491Chr02:23092377..23092401 (25 bp)
GCCGTCACGGTTCAAGCTGGAGGCC
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--935--551Chr02:23092408..23092432 (25 bp)
ATCCGTGACCGGGACACGCGCGGCG
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--618--5691Chr02:23092456..23092480 (25 bp)
GACTTCGCGCAGTCGCTGTGGGACA
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--50--4131Chr02:23092463..23092487 (25 bp)
CGCAGTCGCTGTGGGACACGTACGA
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--299--5071Chr02:23092628..23092652 (25 bp)
GCAGCCGCAGCCTGAGGAGCATATT
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--1118--191Chr02:23092648..23092672 (25 bp)
ATATTCCTCCGGTCATCGTGGTCAT
LOC_Os02g38170
OsAffx.12393.1.S1_x_at--673--9011Chr02:23092735..23092759 (25 bp)
TGCAATCCTTTTCCGCAATCGTGAA
LOC_Os02g38170
Target Sequence 
GCGTGGCACGCGCAGTCGGGCAACCCGCGCGCGGTGGCGTCGGCGGCGGCGCAAGGGGCGGACGACGACGGCGGCGGCGG
CGGCGTCTCTTCCTCGGGCACGCGCCGCGCGGGAGTGGGAGGCCCGGGACGGCGCAGGCCGTCACGGTTCAAGCTGGAGG
CCGCGGCGATCCGTGACCGGGACACGCGCGGCGGCGGCGGCGGCGAGAGGGCGTGGGACTTCGCGCAGTCGCTGTGGGAC
ACGTACGAGCTCGTCGCCGTGGCGCGGAGGCTCGAGTCCGGCCTCGTCCTCGCCGACCACCATCCCGGCGCCGCCGCCGC
CCAGGAGCGCGCCGCCACCACGCGGGAAGGAGGAGGAGGAGGAGGAGGGGTGAAGCGAGCGAGGGAGAGCAGCCGCAGCC
TGAGGAGCATATTCCTCCGGTCATCGTGGTCATCGTCCAGGAGGTTCGACGAACCACGCAGCTAGTGCTCTCTCTTCCTC
CCCATTATATTGACGTGCAATCCTTTTCCGCAATCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12393.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis