Browse Element(s) Details


OsAffx.12455.1.S1_at

Description tigr:9630.m04058
TID=OsAffx.12455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4239011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42360OsAffx.12454.1.S1_at11/112+25475019..25476086expressed protein
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12455.1.S1_at--2--8251Chr02:25499314..25499338 (25 bp)
GGCGTCAAGCCGAGTAGGCCCAAGA
LOC_Os02g42390
OsAffx.12455.1.S1_at--595--2591Chr02:25499281..25499305 (25 bp)
AACGCAGGCATCCAGATCGGCCAAG
LOC_Os02g42390
OsAffx.12455.1.S1_at--204--2811Chr02:25499140..25499164 (25 bp)
AAGATCTTGGAGTTCCACGCCAGGT
LOC_Os02g42390
OsAffx.12455.1.S1_at--648--8031Chr02:25499132..25499156 (25 bp)
GGAGTTCCACGCCAGGTACTCGAAT
LOC_Os02g42390
OsAffx.12455.1.S1_at--166--1031Chr02:25499119..25499143 (25 bp)
AGGTACTCGAATCTGGTCGCCACGA
LOC_Os02g42390
OsAffx.12455.1.S1_at--1049--4611Chr02:25499025..25499049 (25 bp)
GCGAGTGCCACGAGATCCTCGGCGA
LOC_Os02g42390
OsAffx.12455.1.S1_at--1060--1891Chr02:25498941..25498965 (25 bp)
ACGTCGACGTCACGTTGGCCGCGAT
LOC_Os02g42390
OsAffx.12455.1.S1_at--361--8471Chr02:25498926..25498950 (25 bp)
TGGCCGCGATCCTGCTGCGTCTGAG
LOC_Os02g42390
OsAffx.12455.1.S1_at--603--9991Chr02:25498887..25498911 (25 bp)
TAGCCGTGCAGTTGGCAAGAAGCCG
LOC_Os02g42390
OsAffx.12455.1.S1_at--988--4411Chr02:25498866..25498890 (25 bp)
GCCGGCGTGATAGAACCCGCTACGG
LOC_Os02g42390
OsAffx.12455.1.S1_at--24--10031Chr02:25498856..25498880 (25 bp)
TAGAACCCGCTACGGTGCCAGGCAG
LOC_Os02g42390
Target Sequence 
GGCGTCAAGCCGAGTAGGCCCAAGAGGCCCCGCAACGCAGGCATCCAGATCGGCCAAGCCGCCGTCGCCGCCGCCGCCGC
CGCCGCCGACGACGACGACGACGGCGAGGCGGGGGGCGACCCGTGCTGGCTCGTCACGGAGCGGAACCCCCACGCCGCCG
CCGTCACGTTCAGGAAGATCTTGGAGTTCCACGCCAGGTACTCGAATCTGGTCGCCACGATCAAGCGCGCGGAGGAGCTC
GCGAGAACGCGGCACCCTCGCGGCGCCCTCGAGGACCTCTTCCCTGGCCGCGAGTGCCACGAGATCCTCGGCGAGCTGTA
CGGCGGCGGCTGGAGGACGATGCGGGCGGCGGTGGTCGAGGACGGCGACGGCCACGTCGACGTCACGTTGGCCGCGATCC
TGCTGCGTCTGAGGGCGGAGGAGGACGTAGCCGTGCAGTTGGCAAGAAGCCGGCGTGATAGAACCCGCTACGGTGCCAGG
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis