Browse Element(s) Details


OsAffx.12493.1.S1_at

Description tigr:9630.m04312
TID=OsAffx.12493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4456011/11C2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44540Os.49235.2.S1_x_at11/112+26976338..26981015expressed protein
LOC_Os02g44540Os.49235.1.S1_at10/112+26976338..26981015expressed protein
LOC_Os02g44540OsAffx.16132.1.S1_at1/112+26976338..26981015expressed protein
LOC_Os02g44550Os.52949.1.S1_s_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.1.S1_at11/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.8062.2.S1_x_at10/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44550Os.52949.1.S1_at1/112+26982810..26988113NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os02g44560OsAffx.12493.1.S1_at11/112+27003151..27004148C2 domain containing protein
LOC_Os02g44570Os.52583.1.S1_at11/112+27004568..27009317Mitochondrial carrier protein, expressed
LOC_Os02g44580OsAffx.12494.1.S1_at11/112+27009337..27009837expressed protein
LOC_Os02g44590Os.3768.1.S1_at11/112+27012483..27015850Subtilisin N-terminal Region family protein, expressed
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12493.1.S1_at--540--232Chr02:27003228..27003252 (25 bp)
ATATTCTTCACCCTATCTTGTTTCA
LOC_Os02g44560
OsAffx.12493.1.S1_at--157--5551Chr02:27003253..27003277 (25 bp)
GAAACTCTAATGCTCATGACCTCCG
LOC_Os02g44560
OsAffx.12493.1.S1_at--489--8931Chr02:27003269..27003293 (25 bp)
TGACCTCCGATTTTGCTCATTGGCA
LOC_Os02g44560
OsAffx.12493.1.S1_at--908--7631Chr02:27003341..27003365 (25 bp)
GGGACCAAATTTTCACGAGCAAGAT
LOC_Os02g44560
OsAffx.12493.1.S1_at--402--5331Chr02:27003506..27003530 (25 bp)
GAAGTTCAGATTCCCGTTGTCATCG
LOC_Os02g44560
OsAffx.12493.1.S1_at--246--2771Chr02:27003541..27003565 (25 bp)
AAGAGCTTGCAAAGGTCACACTGAA
LOC_Os02g44560
OsAffx.12493.1.S1_at--595--5611Chr02:27003611..27003732 (25 bp)
GACAAAGGTTCATGTCGGCGACATC
LOC_Os02g44560
OsAffx.12493.1.S1_at--89--1231Chr02:27003836..27003991 (25 bp)
AGTTCCTCCCCAATGTAAGCTTGGA
LOC_Os02g44560
OsAffx.12493.1.S1_at--182--10391Chr02:27004049..27004073 (25 bp)
TTTTCTGAACATCACGCTGCCGGAC
LOC_Os02g44560
OsAffx.12493.1.S1_at--477--4491Chr02:27004067..27004091 (25 bp)
GCCGGACATCCCATGGAGGAGGTTA
LOC_Os02g44560
OsAffx.12493.1.S1_at--237--991Chr02:27004083..27004107 (25 bp)
AGGAGGTTATTCTTCTTCTGCACAC
LOC_Os02g44560
Target Sequence 
ATATTCTTCACCCTATCTTGTTTCAGAAACTCTAATGCTCATGACCTCCGATTTTGCTCATTGGCATGGAATGTTTGCAG
GAACGCAAAGACACTACGTGAACATTCAGTTCGGGGACCAAATTTTCACGAGCAAGATCACACAAGGTAAAGGTAAAAAG
GTTTGGTGGAACGAGAAGTTCAGATTCCCGTTGTCATCGGATGAATGCAAAGAGCTTGCAAAGGTCACACTGAAGATCAT
GGAGAGGGATAAGTTCTCTGAAGACAGTCTAGTTGGGGAGACAAAGGTTCATGTCGGCGACATCATCAGCGAGGGCATCG
AGAGGGAGTTCTTGCAGATGAAGCCTGCTCCCTACAACGTCGTGCTGGAGGACGGTAGGTACAAGGGAGAGCTCAAGCTT
GGCCTCAAGTTCCTCCCCAATGTAAGCTTGGAGAGCCTGGAGCAGTGCACCGTGCCGCCGCGGAGGCAGACGAGCGTCCC
GTACAGGCCTTTTCTGAACATCACGCTGCCGGACATCCCATGGAGGAGGTTATTCTTCTTCTGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis