Browse Element(s) Details


OsAffx.12498.1.S1_at

Description tigr:9630.m04343
TID=OsAffx.12498.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-motif lipasehydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4485011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44800OsAffx.24727.1.S1_at11/112+27126566..27126784hypothetical protein
LOC_Os02g44810Os.9636.1.S1_s_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44810OsAffx.24728.1.S1_at11/112+27128686..27130870tRNA pseudouridine synthase family protein, expressed
LOC_Os02g44820Os.51119.1.S1_at11/112+27131359..27132416expressed protein
LOC_Os02g44820Os.14076.1.S1_s_at11/112+27131359..27132416expressed protein
LOC_Os02g44830OsAffx.24729.1.S1_at11/112+27147320..27148582hypothetical protein
LOC_Os02g44840NANA2+27149615..27150229hypothetical protein
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12498.1.S1_at--336--8491Chr02:27151870..27151894 (25 bp)
TGGCTACAACTTGGCAGACCAGCTA
LOC_Os02g44850
OsAffx.12498.1.S1_at--496--9351Chr02:27151715..27151739 (25 bp)
TCGCTGACAGCGAAGACCATCGTTT
LOC_Os02g44850
OsAffx.12498.1.S1_at--623--2771Chr02:27151703..27151727 (25 bp)
AAGACCATCGTTTCGCAGATGTACA
LOC_Os02g44850
OsAffx.12498.1.S1_at--941--2871Chr02:27151679..27151703 (25 bp)
AAGGGCATCAACTTCGCATCAGGCG
LOC_Os02g44850
OsAffx.12498.1.S1_at--475--4671Chr02:27151657..27151681 (25 bp)
GCGGATCAGGCCTCGGTGACAAAAC
LOC_Os02g44850
OsAffx.12498.1.S1_at--326--6271Chr02:27151498..27151522 (25 bp)
GATGTAATCCCGATGTTCCAGCAAG
LOC_Os02g44850
OsAffx.12498.1.S1_at--1117--6671Chr02:27151484..27151508 (25 bp)
GTTCCAGCAAGTGCAGTACTTCTCG
LOC_Os02g44850
OsAffx.12498.1.S1_at--410--6331Chr02:27151445..27151469 (25 bp)
GATGCAGAAGCTGTCAGGCTCGAGA
LOC_Os02g44850
OsAffx.12498.1.S1_at--64--2591Chr02:27151369..27151393 (25 bp)
AACGACATGTTCGAGTACTCCTTGT
LOC_Os02g44850
OsAffx.12498.1.S1_at--849--1191Chr02:27150925..27151344 (25 bp)
AGTTTCTGCTGGGTTTCACGGAGCT
LOC_Os02g44850
OsAffx.12498.1.S1_at--401--1871Chr02:27150823..27150847 (25 bp)
ACGACCACCTGTTCTGGGATGCCAA
LOC_Os02g44850
Target Sequence 
TGGCTACAACTTGGCAGACCAGCTAGCTCAGCAGCTCGGCTTCCCAATGAGCCCACCGGCGTACCTGTCGCTGACAGCGA
AGACCATCGTTTCGCAGATGTACAAGGGCATCAACTTCGCATCAGGCGGATCAGGCCTCGGTGACAAAACCGGCCAAGGG
GCCGGGGATGTAATCCCGATGTTCCAGCAAGTGCAGTACTTCTCGAAGGTGGTGGCGATGATGCAGAAGCTGTCAGGCTC
GAGAACAACCAACACTCTCCTCTCCAAGTCCATCTTCCTCATCAGCACCGGCAGCAACGACATGTTCGAGTACTCCTTGT
CCGGCGGCAACGGCGACGACCGCGAGTTTCTGCTGGGTTTCACGGAGCTGGAGTCCGGGTGCTGTGGGTCGGGGCCGTTT
GGAGCGCTCGGGTGCGACGAGACTGCGCCGCTGTGCAACAACCGCGACGACCACCTGTTCTGGGATGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis