Browse Element(s) Details


OsAffx.12499.1.S1_at

Description tigr:9630.m04347
TID=OsAffx.12499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44850OsAffx.12498.1.S1_at11/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44850OsAffx.25298.1.S1_at1/112+27150720..27152112GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44860Os.50931.1.S1_at11/112+27152484..27156895GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g44870Os.12167.1.S1_at11/112+27159565..27161029Dehydrin family protein, expressed
LOC_Os02g44880Os.17797.1.A1_at11/112+27177060..27180836expressed protein
LOC_Os02g44880OsAffx.12499.1.S1_at11/112+27177060..27180836expressed protein
LOC_Os02g44890Os.36087.1.A1_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_s_at11/112+27182151..27186029expressed protein
LOC_Os02g44890OsAffx.12500.1.S1_at10/112+27182151..27186029expressed protein
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12499.1.S1_at--393--1351Chr02:27178983..27179007 (25 bp)
AGAGTTCATTCCTCATGTGGTCGCT
LOC_Os02g44880
OsAffx.12499.1.S1_at--250--1211Chr02:27180253..27180277 (25 bp)
AGTTTCCACGCTTTGCGTTTGCGAA
LOC_Os02g44880
OsAffx.12499.1.S1_at--280--6791Chr02:27180269..27180293 (25 bp)
GTTTGCGAACCCGAAGTTCCTGGAT
LOC_Os02g44880
OsAffx.12499.1.S1_at--1073--8431Chr02:27180303..27180327 (25 bp)
TGGCCATGTACGGTATCGAGTTCGA
LOC_Os02g44880
OsAffx.12499.1.S1_at--292--1791Chr02:27180382..27180406 (25 bp)
ACCGTGCGGATTCGAGATCTCGCGA
LOC_Os02g44880
OsAffx.12499.1.S1_at--337--8471Chr02:27180486..27180510 (25 bp)
TGGCGCTGGAATACGACCACGCGAG
LOC_Os02g44880
OsAffx.12499.1.S1_at--1019--4911Chr02:27180670..27180694 (25 bp)
GCTTCCACAGTGTGTCACAGCTTGT
LOC_Os02g44880
OsAffx.12499.1.S1_at--1126--3611Chr02:27180690..27180714 (25 bp)
CTTGTTTATTACACCAGCTGCTTGT
LOC_Os02g44880
OsAffx.12499.1.S1_at--381--6891Chr02:27180713..27180737 (25 bp)
GTATATTTTACTTGTCCGTGCTCGC
LOC_Os02g44880
OsAffx.12499.1.S1_at--40--3811Chr02:27180733..27180757 (25 bp)
CTCGCCAAGGCCATATTCCATATTT
LOC_Os02g44880
OsAffx.12499.1.S1_at--683--8011Chr02:27180769..27180793 (25 bp)
GGAGGAATGCGCAGCTATTTCGAGC
LOC_Os02g44880
Target Sequence 
AGAGTTCATTCCTCATGTGGTCGCTCTCGAGTTTCCACGCTTTGCGTTTGCGAACCCGAAGTTCCTGGATCCCCGGACGT
GGCCATGTACGGTATCGAGTTCGATCGCTTGCAGTCGCGGTCTGCTTCGACGCGCTTTCGCGCGGAGCGAGGGCCGCGAC
CGTGCGGATTCGAGATCTCGCGACCTTCTGGAGGTCCAAGCCCGGGAGTCCCCGTGGCGCTTATTTTAGGCGGAAGGAAG
CTGCCAAGCTGCCACGCGGTGGTGGCGCTGGAATACGACCACGCGAGCGTGCAGAAGGAGCGCTGGTTGGCTGGGTGCCC
GACAGGATGCGTGCCCCCTGTTCCCCTGGCCGCGGACTACGGCTGCTTCCACAGTGTGTCACAGCTTGTTTATTACACCA
GCTGCTTGTATATTTTACTTGTCCGTGCTCGCCAAGGCCATATTCCATATTTGTATGGACTCTGGAGGAATGCGCAGCTA
TTTCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis