Browse Element(s) Details


OsAffx.12512.1.S1_at

Description tigr:9630.m04453
TID=OsAffx.12512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4588011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45860Os.53431.1.S1_at11/112+27953928..27954689expressed protein
LOC_Os02g45870Os.53134.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45870Os.53054.1.S1_at11/112+27956356..27959345tobamovirus multiplication protein 3, putative, expressed
LOC_Os02g45880OsAffx.12512.1.S1_at11/112+27959724..27960431expressed protein
LOC_Os02g45890OsAffx.2974.1.S1_s_at11/112+27961606..27962975Sulfotransferase domain containing protein, expressed
LOC_Os02g45900OsAffx.2975.1.S1_at11/112+27964235..27966164hypothetical protein
LOC_Os02g45910OsAffx.12696.1.S1_at11/112+27971718..27973941tRNA-splicing endonuclease positive effector, putative
LOC_Os02g45920Os.17229.1.S1_at10/112+27979070..27983486expressed protein
LOC_Os02g45930Os.49582.1.S1_at11/112+27983621..27984706expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12512.1.S1_at--415--1451Chr02:27960013..27960037 (25 bp)
AGAAGCTAATCGTCGAGACCGCCGC
LOC_Os02g45880
OsAffx.12512.1.S1_at--201--4131Chr02:27960148..27960172 (25 bp)
CGCAGGAGCTCTTCGTGGACGGCAA
LOC_Os02g45880
OsAffx.12512.1.S1_at--145--7431Chr02:27960237..27960261 (25 bp)
GTGTTCTGCCAATGCGTGCTCTACT
LOC_Os02g45880
OsAffx.12512.1.S1_at--844--3011Chr02:27960247..27960271 (25 bp)
AATGCGTGCTCTACTCCGTTCTGGG
LOC_Os02g45880
OsAffx.12512.1.S1_at--940--9531Chr02:27960256..27960280 (25 bp)
TCTACTCCGTTCTGGGCAGGGCCGC
LOC_Os02g45880
OsAffx.12512.1.S1_at--287--4511Chr02:27960279..27960303 (25 bp)
GCCGAGTCGGAATCGATGCTCCGGC
LOC_Os02g45880
OsAffx.12512.1.S1_at--213--3951Chr02:27960286..27960310 (25 bp)
CGGAATCGATGCTCCGGCGCTGCCG
LOC_Os02g45880
OsAffx.12512.1.S1_at--365--8391Chr02:27960321..27960345 (25 bp)
GGCGAAGAATCCGTCGCCGATTTCG
LOC_Os02g45880
OsAffx.12512.1.S1_at--330--7231Chr02:27960333..27960357 (25 bp)
GTCGCCGATTTCGTAATGCCGGTCT
LOC_Os02g45880
OsAffx.12512.1.S1_at--921--9731Chr02:27960346..27960370 (25 bp)
TAATGCCGGTCTCGCCGTTGCCGGT
LOC_Os02g45880
OsAffx.12512.1.S1_at--138--4251Chr02:27960366..27960390 (25 bp)
CCGGTCGATTCGTCGGAGGCGGAAG
LOC_Os02g45880
Target Sequence 
AGAAGCTAATCGTCGAGACCGCCGCGCTCGCCAGCTTCGGCGGCGCGGAGGCCGCGCGGGCCCGCCTCTCCGCCGCCGCC
GCCGCCGCCGCCGGAGTCGTCGGCGGCCGCGAGCAATACGCCCGCCTCCTCGCCGCGCAGGAGCTCTTCGTGGACGGCAA
GGTGGACGACGCGATCGCCGCCTTCGAGGAGCTCGCCCGGGAGGACCCCGGCGACTACCGCCCCGTGTTCTGCCAATGCG
TGCTCTACTCCGTTCTGGGCAGGGCCGCCGAGTCGGAATCGATGCTCCGGCGCTGCCGCGAGCTCGCCGGCGAAGAATCC
GTCGCCGATTTCGTAATGCCGGTCTCGCCGTTGCCGGTCGATTCGTCGGAGGCGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis