Browse Element(s) Details


OsAffx.12550.1.S1_at

Description tigr:9630.m04730
TID=OsAffx.12550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4850011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein
LOC_Os02g48490OsAffx.24783.1.S1_at11/112+29679419..29680342hypothetical protein
LOC_Os02g48500OsAffx.12550.1.S1_at11/112+29684238..29684717hypothetical protein
LOC_Os02g48510OsAffx.25095.3.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48510OsAffx.25095.5.S1_x_at1/112+29688880..29690097hypothetical protein
LOC_Os02g48520OsAffx.12552.1.S1_at11/112+29693627..29693902hypothetical protein
LOC_Os02g48530NANA2+29702623..29703243hypothetical protein
LOC_Os02g48540NANA2+29708013..29709564retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12550.1.S1_at--423--5091Chr02:29684648..29684672 (25 bp)
GCACCGGTATCTGCCGGAAGGCTAT
LOC_Os02g48500
OsAffx.12550.1.S1_at--1122--2931Chr02:29684631..29684655 (25 bp)
AAGGCTATATCGTTGTCCGGTGTGC
LOC_Os02g48500
OsAffx.12550.1.S1_at--980--7251Chr02:29684602..29684626 (25 bp)
GTCCTGTGATCTTGTATTCGTGCCA
LOC_Os02g48500
OsAffx.12550.1.S1_at--857--71Chr02:29684587..29684611 (25 bp)
ATTCGTGCCAAGATCTTAGGAACCA
LOC_Os02g48500
OsAffx.12550.1.S1_at--195--10491Chr02:29684551..29684575 (25 bp)
TTCACCCAAACGAGGCTGTAGAGTT
LOC_Os02g48500
OsAffx.12550.1.S1_at--826--7351Chr02:29684525..29684549 (25 bp)
GTGACGCCGTTTATGCGGTACATAG
LOC_Os02g48500
OsAffx.12550.1.S1_at--1115--7971Chr02:29684428..29684452 (25 bp)
GGATGCCAACCCCAACAGTACAAAA
LOC_Os02g48500
OsAffx.12550.1.S1_at--808--3231Chr02:29684382..29684406 (25 bp)
CAACCTTGCCTTCTGGGAGGAGTAC
LOC_Os02g48500
OsAffx.12550.1.S1_at--258--8191Chr02:29684348..29684372 (25 bp)
GGAAGCCGTCCTGTTGAGATAGACT
LOC_Os02g48500
OsAffx.12550.1.S1_at--790--6031Chr02:29684333..29684357 (25 bp)
GAGATAGACTTCTTCGTACCAGTCA
LOC_Os02g48500
OsAffx.12550.1.S1_at--60--6971Chr02:29684318..29684342 (25 bp)
GTACCAGTCATTGTTGTGTCGGCGC
LOC_Os02g48500
Target Sequence 
GCACCGGTATCTGCCGGAAGGCTATATCGTTGTCCGGTGTGCCCCGGTCCTGTGATCTTGTATTCGTGCCAAGATCTTAG
GAACCATCTATGTATAATTCACCCAAACGAGGCTGTAGAGTTGGTGACGCCGTTTATGCGGTACATAGAGGCTTCTAGGC
GTGGGAGGGTCGGCCTCCCGCCACGGCCACCGACCTCGGCCCCAGTGGTGCCACAAGCACGGATGCCAACCCCAACAGTA
CAAAACTCGTTTGTCCCACTTCCTCCCAACCTTGCCTTCTGGGAGGAGTACCGCAAGGGAGGAAGCCGTCCTGTTGAGAT
AGACTTCTTCGTACCAGTCATTGTTGTGTCGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis