Browse Element(s) Details


OsAffx.12598.1.S1_at

Description tigr:9630.m05087
TID=OsAffx.12598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 26643-27671
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5172011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51680Os.50393.1.S1_at11/112+31657211..31659949trehalose-phosphatase family protein, expressed
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein
LOC_Os02g51710Os.8165.1.S1_at11/112+31670605..31671686wound/stress protein, putative, expressed
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12598.1.S1_at--42--8291Chr02:31678064..31678088 (25 bp)
GGCATCAAGAAGGACGCGCTGCCGT
LOC_Os02g51720
OsAffx.12598.1.S1_at--797--7231Chr02:31678124..31678148 (25 bp)
GTCGCCGGCTGCTTCGGTAGCTTTC
LOC_Os02g51720
OsAffx.12598.1.S1_at--918--4751Chr02:31678229..31678253 (25 bp)
GCTGCATTGGCCAAGTGGTTCATGG
LOC_Os02g51720
OsAffx.12598.1.S1_at--1150--3211Chr02:31678240..31678264 (25 bp)
CAAGTGGTTCATGGTGCTCGAGGAA
LOC_Os02g51720
OsAffx.12598.1.S1_at--841--3231Chr02:31678267..31678291 (25 bp)
CAAGAAGGTATCAAGCAGGAAGCGG
LOC_Os02g51720
OsAffx.12598.1.S1_at--781--4591Chr02:31678361..31678385 (25 bp)
GCGAACGCCCTGATGCTGATGCGGT
LOC_Os02g51720
OsAffx.12598.1.S1_at--1084--4171Chr02:31678368..31678392 (25 bp)
CCCTGATGCTGATGCGGTGCCGGTC
LOC_Os02g51720
OsAffx.12598.1.S1_at--701--8051Chr02:31678492..31678516 (25 bp)
GGAGAGGCTTGTGCTCATGAGCTAC
LOC_Os02g51720
OsAffx.12598.1.S1_at--830--10751Chr02:31678500..31678524 (25 bp)
TTGTGCTCATGAGCTACGCCCCTGA
LOC_Os02g51720
OsAffx.12598.1.S1_at--826--9951Chr02:31678514..31678538 (25 bp)
TACGCCCCTGACTTCTTCAAGGTAT
LOC_Os02g51720
OsAffx.12598.1.S1_at--274--9731Chr02:31678530..31678554 (25 bp)
TCAAGGTATCCGTCGACATCGCCAA
LOC_Os02g51720
Target Sequence 
GGCATCAAGAAGGACGCGCTGCCGTTCTTGAACGCCGTGCACGGCGCCTTCCGCCTCAACGTCGCCGGCTGCTTCGGTAG
CTTTCCCGGCGCCGTGGTGGAGTACACCTCCGGGGAGGATGACGACGACGAGGAGCTCGCGGCGGGGAAGGACACAGAGC
ACGGGGCTGCATTGGCCAAGTGGTTCATGGTGCTCGAGGAAGGCAAGAAGGTATCAAGCAGGAAGCGGGAGCAAGAGCCG
CAGAAGCAGCAGGAGGAGGAGGAGCAGGACAAGAAGGAAGCGGACGTGGCGCCGCCGGCGAACGCCCTGATGCTGATGCG
GTGCCGGTCGGCGCCGGCTAAGGGGTTGCCGAGGAGGTTAGGAGGAGATGCAGAGGAGGAGGTGATCAAGAACTCCAAGA
AGGAGGAGGAAGAAGAGGATGAGAAGGAGGAGAGGCTTGTGCTCATGAGCTACGCCCCTGACTTCTTCAAGGTATCCGTC
GACATCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis