Browse Element(s) Details


OsAffx.12631.1.S1_at

Description tigr:9630.m05330
TID=OsAffx.12631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to subtilisin-like proteinase (EC 3.4.21.-) precursor P69B, pathogenesis-related - tomato
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5385011/11Subtilisin N-terminal Region family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53810Os.54965.1.S1_at11/112+32951587..32955476expressed protein
LOC_Os02g53820Os.53793.1.S1_at11/112+32956102..32958650Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g53830OsAffx.12629.1.S1_at11/112+32959850..32962563expressed protein
LOC_Os02g53840OsAffx.12630.1.S1_at11/112+32971010..32972057Subtilisin N-terminal Region family protein, expressed
LOC_Os02g53850OsAffx.12631.1.S1_at11/112+32975405..32977751Subtilisin N-terminal Region family protein
LOC_Os02g53860Os.18825.1.S1_at11/112+32979233..32981976subtilase family protein, putative, expressed
LOC_Os02g53870Os.51349.1.S1_at11/112+32985610..32986341expressed protein
LOC_Os02g53870Os.55356.1.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53870Os.35710.2.S1_x_at1/112+32985610..32986341expressed protein
LOC_Os02g53880NANA2+32987710..32987913hypothetical protein
LOC_Os02g53890NANA2+32989888..32990268hypothetical protein
LOC_Os02g53900OsAffx.24858.1.S1_at11/112+32998380..32998763hypothetical protein
LOC_Os02g53910OsAffx.3059.1.S1_at11/112+33002645..33004717Subtilase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12631.1.S1_at--620--6231Chr02:32977101..32977125 (25 bp)
GATGGCACGGCCAAGCTGGATCCCT
LOC_Os02g53850
OsAffx.12631.1.S1_at--819--7971Chr02:32977118..32977142 (25 bp)
GGATCCCTGCGATGATCATGTCGGC
LOC_Os02g53850
OsAffx.12631.1.S1_at--360--251Chr02:32977339..32977363 (25 bp)
ATATCGTCGGTATCTTCTTGAGGGA
LOC_Os02g53850
OsAffx.12631.1.S1_at--529--9531Chr02:32977354..32977378 (25 bp)
TCTTGAGGGACGGAACGATCACCAA
LOC_Os02g53850
OsAffx.12631.1.S1_at--78--1711Chr02:32977374..32977398 (25 bp)
ACCAACTGTTCGACGCGGGCGAGCA
LOC_Os02g53850
OsAffx.12631.1.S1_at--391--4011Chr02:32977423..32977447 (25 bp)
CGTCCATCTCGGTGGCGGTCAAGGC
LOC_Os02g53850
OsAffx.12631.1.S1_at--561--9931Chr02:32977449..32977473 (25 bp)
TACGGCGACGATATCACGGTGCGAC
LOC_Os02g53850
OsAffx.12631.1.S1_at--397--4131Chr02:32977580..32977604 (25 bp)
CGCGGAGCACCAGACGAGGACGTAC
LOC_Os02g53850
OsAffx.12631.1.S1_at--620--1551Chr02:32977635..32977659 (25 bp)
AGCTTCGACGAGTACACGCACGGTT
LOC_Os02g53850
OsAffx.12631.1.S1_at--740--5091Chr02:32977652..32977676 (25 bp)
GCACGGTTCCATCGTCTGGAGCGAC
LOC_Os02g53850
OsAffx.12631.1.S1_at--208--4591Chr02:32977680..32977704 (25 bp)
GCGCACAAGGTGAGGAGCCCCATCG
LOC_Os02g53850
Target Sequence 
GATGGCACGGCCAAGCTGGATCCCTGCGATGATCATGTCGGCCCTGACGACGACGGCCGGCCTTGACCCGGGGCTCGTCT
ACGACGCCGGCGTCGACGACTACCTCGACGTCCTGTGCGCGCTCGGCTACTCCGACGAGGATATCGTCGGTATCTTCTTG
AGGGACGGAACGATCACCAACTGTTCGACGCGGGCGAGCACCACCGTGGCGGACCTGAACCGCGCGTCCATCTCGGTGGC
GGTCAAGGCGTACGGCGACGATATCACGGTGCGACGCACCGTGCGCAACGTCGGCGGCAGCGTCGACGCCGTGTACACCG
TCGGCGGGGTGCCACCGCCGGGCACGCAGCTCCGCATCAGGCCGTCGAAGCTGGTGTTCGACGCGGAGCACCAGACGAGG
ACGTACGACGTCGTCATCCGCACGGTGTCCTCCGGCAGCTTCGACGAGTACACGCACGGTTCCATCGTCTGGAGCGACGG
CGCGCACAAGGTGAGGAGCCCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis