Browse Element(s) Details


OsAffx.12642.1.S1_at

Description tigr:9630.m05422
TID=OsAffx.12642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5468011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12642.1.S1_at--938--9551Chr02:33483150..33483174 (25 bp)
TCTTCTCCTCGTCTGGGACTCTAGG
LOC_Os02g54680
OsAffx.12642.1.S1_at--904--9251Chr02:33483155..33483179 (25 bp)
TCCTCGTCTGGGACTCTAGGCAGGG
LOC_Os02g54680
OsAffx.12642.1.S1_at--1085--9531Chr02:33483169..33483193 (25 bp)
TCTAGGCAGGGTGGCCAACGGGTGC
LOC_Os02g54680
OsAffx.12642.1.S1_at--727--5571Chr02:33483219..33483243 (25 bp)
GAAAGGAGGAGGTCCAATAACCAGT
LOC_Os02g54680
OsAffx.12642.1.S1_at--673--8011Chr02:33483226..33483250 (25 bp)
GGAGGTCCAATAACCAGTGACGGGT
LOC_Os02g54680
OsAffx.12642.1.S1_at--505--4371Chr02:33483232..33483256 (25 bp)
CCAATAACCAGTGACGGGTGGCACT
LOC_Os02g54680
OsAffx.12642.1.S1_at--934--1911Chr02:33483245..33483269 (25 bp)
ACGGGTGGCACTGTGGCGGCTACTC
LOC_Os02g54680
OsAffx.12642.1.S1_at--959--2911Chr02:33483284..33483308 (25 bp)
AAGGAGGGAGCACAATGCCTCCCCT
LOC_Os02g54680
OsAffx.12642.1.S1_at--774--3491Chr02:33483358..33483382 (25 bp)
CAGGCGACATGCGACGTGGCGACAT
LOC_Os02g54680
OsAffx.12642.1.S1_at--325--3931Chr02:33483423..33483447 (25 bp)
CGGAGGTAGACTCGGCGGGCACGGT
LOC_Os02g54680
OsAffx.12642.1.S1_at--129--3751Chr02:33483478..33483502 (25 bp)
CTCTTCTTGTGCACTCGCTACCGGC
LOC_Os02g54680
Target Sequence 
TCTTCTCCTCGTCTGGGACTCTAGGCAGGGTGGCCAACGGGTGCAGAGGAGGCCGGCCAGGCAAGGCGGGAAAGGAGGAG
GTCCAATAACCAGTGACGGGTGGCACTGTGGCGGCTACTCCGGCCAGGGGCGCAAAGGAGGGAGCACAATGCCTCCCCTC
CTCACCGTGAAGGAGCTCAACGTCGCCCAGCTGGGCGCCGGGGTGAGGCAGGCGACATGCGACGTGGCGACATGGGAGAA
GGGGCCACACGACGTCGGTGGACTCGGTGGGCGCGGAGGTAGACTCGGCGGGCACGGTGCCCCGGCCTTCTCCCGCGCCG
CCTCCTCCCTCTTCTTGTGCACTCGCTACCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis