Browse Element(s) Details


OsAffx.12648.1.S1_at

Description tigr:9630.m05457
TID=OsAffx.12648.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5497011/11hypothetical protein
LOC_Os01g526102/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54940OsAffx.24872.1.S1_at11/112+33644810..33645488hypothetical protein
LOC_Os02g54950OsAffx.29313.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54950Os.14919.1.S1_at1/112+33654555..33656116hypothetical protein
LOC_Os02g54960OsAffx.3076.1.S1_s_at11/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54960OsAffx.3076.1.S1_at9/112+33657686..33662999carboxyl-terminal proteinase, putative, expressed
LOC_Os02g54970OsAffx.12648.1.S1_at11/112+33667028..33669164hypothetical protein
LOC_Os02g54980Os.26549.1.S1_at11/112+33682481..33684617Rieske domain containing protein, expressed
LOC_Os02g54990Os.37836.1.S1_at11/112+33684922..33688265TMS membrane family protein, putative, expressed
LOC_Os02g55000Os.15421.1.S1_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.1.S1_x_at11/112+33688852..33692692G-patch domain containing protein, expressed
LOC_Os02g55000Os.15421.2.S1_at9/112+33688852..33692692G-patch domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12648.1.S1_at--819--2751Chr02:33667070..33667094 (25 bp)
AAGACGGCCATAAGACTAGCACCAC
LOC_Os02g54970
OsAffx.12648.1.S1_at--1151--5071Chr02:33667088..33667112 (25 bp)
GCACCACCGCATGCAAATCAGGTTT
LOC_Os02g54970
OsAffx.12648.1.S1_at--225--2571Chr02:33667103..33667127 (25 bp)
AATCAGGTTTATCTTACCGGAGCGA
LOC_Os02g54970
OsAffx.12648.1.S1_at--274--3631Chr02:33667115..33667139 (25 bp)
CTTACCGGAGCGAGGGATTACCCAT
LOC_Os02g54970
OsAffx.12648.1.S1_at--390--471Chr02:33667138..33667368 (25 bp)
ATCTCCGGCTCAGGTGTCGCGATTT
LOC_Os02g54970
OsAffx.12648.1.S1_at--1101--7457Chr11:23046125..23046149 (25 bp)
GTGTCGCGATTTGATTTGGCCTGTA
NONE
OsAffx.12648.1.S1_at--1059--2110Chr11:23046149..23046173 (25 bp)
ATATTACTATGTGCAGGGTTCCCTG
NONE
OsAffx.12648.1.S1_at--92--10771Chr02:33668811..33668835 (25 bp)
TTGAGGCAACCGTGCAACGAGACTC
LOC_Os02g54970
OsAffx.12648.1.S1_at--832--2571Chr02:33668826..33668850 (25 bp)
AACGAGACTCGCCTGCTAACATTGT
LOC_Os02g54970
OsAffx.12648.1.S1_at--1108--9811Chr02:33668842..33668866 (25 bp)
TAACATTGTCCAAGCAGCAGGGCAA
LOC_Os02g54970
OsAffx.12648.1.S1_at--609--4331Chr02:33668889..33668913 (25 bp)
CCATCATTCACCATTACGACTGTAG
LOC_Os02g54970
Target Sequence 
AAGACGGCCATAAGACTAGCACCACCGCATGCAAATCAGGTTTATCTTACCGGAGCGAGGGATTACCCATCTCCGGCTCA
GGTGTCGCGATTTGATTTGGCCTGTATATTACTATGTGCAGGGTTCCCTGCACCTGAGCCGGACTCCTCCTGCATTGAGG
CAACCGTGCAACGAGACTCGCCTGCTAACATTGTCCAAGCAGCAGGGCAAACCAGCCAAGCTGCCAGACCAGCCATCATT
CACCATTACGACTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis