Browse Element(s) Details


OsAffx.12691.1.S1_at

Description tigr:9630.m05831
TID=OsAffx.12691.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g584009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein
LOC_Os02g58370OsAffx.12690.1.S1_at11/112+35694546..35696195hypothetical protein
LOC_Os02g58380OsAffx.3102.1.S1_at11/112+35696788..35697622hypothetical protein
LOC_Os02g58390Os.6800.1.S1_x_at11/112+35699844..35704819Protein kinase domain containing protein, expressed
LOC_Os02g58400OsAffx.12691.1.S1_at9/112+35706934..35708962hypothetical protein
LOC_Os02g58410Os.27842.1.S1_at11/112+35712181..35724680expressed protein
LOC_Os02g58420NANA2+35725387..35725647hypothetical protein
LOC_Os02g58430OsAffx.13097.1.S1_s_at11/112+35726314..35731898transposon protein, putative, Mutator sub-class
LOC_Os02g58440Os.27604.1.S1_at11/112+35733119..35737451Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12691.1.S1_at--105--10491Chr02:35708372..35708396 (25 bp)
TTACAAGGTAGCATTACGTGGACGT
LOC_Os02g58400
OsAffx.12691.1.S1_at--394--10471Chr02:35708359..35708383 (25 bp)
TTACGTGGACGTAGAGCCAACTATA
LOC_Os02g58400
OsAffx.12691.1.S1_at--10--5771Chr02:35708352..35708376 (25 bp)
GACGTAGAGCCAACTATAGTCTGTT
LOC_Os02g58400
OsAffx.12691.1.S1_at--55--7191Chr02:35708334..35708358 (25 bp)
GTCTGTTGATTGTTGTACTTCCGCT
LOC_Os02g58400
OsAffx.12691.1.S1_at--385--10811Chr02:35708322..35708346 (25 bp)
TTGTACTTCCGCTAATACTTCTGCA
LOC_Os02g58400
OsAffx.12691.1.S1_at--596--331NONE
ATACTTCTGCAGATCGATCCCCAAT
NONE
OsAffx.12691.1.S1_at--735--3031Chr02:35707805..35707829 (25 bp)
AATCCTCTTCGTGCTGGGCGACGGT
LOC_Os02g58400
OsAffx.12691.1.S1_at--1094--10131NONE
TATCGAGGCTGGCACCTCAACAAGA
NONE
OsAffx.12691.1.S1_at--917--891Chr02:35707071..35707090 (20 bp)
AGGCTGGCACCTCAACAAGAAGGCA
LOC_Os02g58400
OsAffx.12691.1.S1_at--1017--2451Chr02:35707058..35707082 (25 bp)
AACAAGAAGGCAGCGCGTGCATCAA
LOC_Os02g58400
OsAffx.12691.1.S1_at--676--4551Chr02:35707008..35707032 (25 bp)
GCCCAGTCCTACCTCGAGAGAATTG
LOC_Os02g58400
Target Sequence 
TTACAAGGTAGCATTACGTGGACGTAGAGCCAACTATAGTCTGTTGATTGTTGTACTTCCGCTAATACTTCTGCAGATCG
ATCCCCAATCCTCTTCGTGCTGGGCGACGGTGGCATCTCCAATCGCCCTCGCCTACATGCGCGTCCTCCTATCGAGGCTG
GCACCTCAACAAGAAGGCAGCGCGTGCATCAACGGGGCGATTGGGGATGCTGCCGTCGCCCAGTCCTACCTCGAGAGAAT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12691.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis