Browse Element(s) Details


OsAffx.12745.1.S1_at

Description tigr:9631.m00512
TID=OsAffx.12745.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0589011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05830Os.17992.1.A1_at11/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830Os.17992.2.S1_at10/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05830OsAffx.22176.2.S1_at1/113+2901949..2910549transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein
LOC_Os03g05900Os.16891.1.S1_at11/113+2937423..2939509FAD binding domain containing protein, expressed
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12745.1.S1_at--889--9031Chr03:2935314..2935338 (25 bp)
TGCAGCAGCAGTCGACAGTCTTCGT
LOC_Os03g05890
OsAffx.12745.1.S1_at--432--1531Chr03:2935308..2935332 (25 bp)
AGCAGTCGACAGTCTTCGTGCCGCC
LOC_Os03g05890
OsAffx.12745.1.S1_at--227--7231Chr03:2935277..2935301 (25 bp)
GTCGCAGCAGGGTTCGGCTTCAACG
LOC_Os03g05890
OsAffx.12745.1.S1_at--401--4651Chr03:2935197..2935221 (25 bp)
GCGTCAGCCGTGCAGTAGCAGCCAA
LOC_Os03g05890
OsAffx.12745.1.S1_at--1092--9651Chr03:2935194..2935218 (25 bp)
TCAGCCGTGCAGTAGCAGCCAACTC
LOC_Os03g05890
OsAffx.12745.1.S1_at--85--4171Chr03:2935151..2935175 (25 bp)
CGCCGTTGCTGCAGCAAAATCTGGA
LOC_Os03g05890
OsAffx.12745.1.S1_at--73--3271Chr03:2935137..2935161 (25 bp)
CAAAATCTGGAGTGGCGACGGTGTC
LOC_Os03g05890
OsAffx.12745.1.S1_at--13--9471Chr03:2935132..2935156 (25 bp)
TCTGGAGTGGCGACGGTGTCCCCTT
LOC_Os03g05890
OsAffx.12745.1.S1_at--232--5011Chr03:2935035..2935059 (25 bp)
GCATGGCGGCTAGAGATCCAGAGCT
LOC_Os03g05890
OsAffx.12745.1.S1_at--48--4874Chr11:12160916..12160935 (20 bp)
GCTAGAGATCCAGAGCTCCGAATCG
NONE
OsAffx.12745.1.S1_at--18--3711Chr03:2934988..2935012 (25 bp)
CTAGAGGACGAGTTGCGGCAGCAGG
LOC_Os03g05890
Target Sequence 
TGCAGCAGCAGTCGACAGTCTTCGTGCCGCCTCCACCGTCGCAGCAGGGTTCGGCTTCAACGGGTCCGGGAATGAAGCGG
CGCTGGCGCCACGGGAGATGGGGATGGTGGCGAGGCCGCGTCAGCCGTGCAGTAGCAGCCAACTCTCGCGCCGACGCCGG
CACCGCCGTTGCTGCAGCAAAATCTGGAGTGGCGACGGTGTCCCCTTCGCCACGGGGGATGACGATGGTGGTGGCGCCGT
CGAAGGCGTCGCGCGGCCAAGCAAGAGGAGCTCAGGAGGGCATGGCGGCTAGAGATCCAGAGCTCCGAATCGGCCATGAC
GGGCGGCTAGAGGACGAGTTGCGGCAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis