Browse Element(s) Details


OsAffx.12759.1.S1_s_at

Description tigr:9631.m00627
TID=OsAffx.12759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0698011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06960Os.18361.1.S1_at11/113+3530886..3533526Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g06970Os.51791.1.S1_at11/113+3534601..3537463TPR Domain containing protein, expressed
LOC_Os03g06980Os.18512.1.S1_at11/113+3540707..3544476expressed protein
LOC_Os03g06980OsAffx.12759.1.S1_s_at11/113+3540707..3544476expressed protein
LOC_Os03g06990OsAffx.3158.1.S1_at11/113+3545888..3547932oxidoreductase, 2OG-Fe oxygenase family protein, putative
LOC_Os03g07000OsAffx.25000.1.S1_at11/113+3549088..3550939prolyl 4-hydroxylase, putative, expressed
LOC_Os03g07010OsAffx.3900.1.S1_at11/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.21921.1.S1_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07010OsAffx.3584.1.S1_x_at1/113+3552527..3555974retrotransposon protein, putative, unclassified
LOC_Os03g07020NANA3+3558912..3562217retrotransposon protein, putative, unclassified
LOC_Os03g07030NANA3+3562832..3568987retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12759.1.S1_s_at--204--6671Chr03:3542692..3542716 (25 bp)
GTTGAAGGCTATGGGACAGGCTATC
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--492--10111Chr03:3542683..3542707 (25 bp)
TATGGGACAGGCTATCAGCAAGACA
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--905--5651Chr03:3542662..3542686 (25 bp)
GACAGTGGCTATTGCTGAGATCATA
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--118--3251Chr03:3541857..3541881 (25 bp)
CAACCAGGGAGGATATGGCCACAAT
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--514--8631Chr03:3541663..3541687 (25 bp)
TGGTGGCTGGAACTACAACCGGAAC
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--672--7791Chr03:3541082..3541106 (25 bp)
GGTCCAGGAGGATATGAACGTTCAG
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--473--671Chr03:3541069..3541093 (25 bp)
ATGAACGTTCAGGTCCGGCATATGA
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--72--9291Chr03:3541056..3541080 (25 bp)
TCCGGCATATGAACGTGGTGGCAGA
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--207--8451Chr03:3540975..3540999 (25 bp)
TGGCCGTGGGCGAGGCAACCAAAAC
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--492--4611Chr03:3540966..3540990 (25 bp)
GCGAGGCAACCAAAACTATTAGATC
LOC_Os03g06980
OsAffx.12759.1.S1_s_at--378--2031Chr03:3540940..3540964 (25 bp)
ACTTTAGTTGGATGTGCCAGCCCGG
LOC_Os03g06980
Target Sequence 
GTTGAAGGCTATGGGACAGGCTATCAGCAAGACAGTGGCTATTGCTGAGATCATAAAGATTCATATGGGCGCGGCCGTGG
TAGAGGCAGAGGAAGAGGAAGGGGTTGGGGTGGTAGGGGAGGCTATGGTGGAGGGTATGGTGGATATGATAACAACCAAG
GAGGTTATGGTGGATATGGACACCAGGGTGGATATGGACACCAAGGGGGGTATGGCAACCAGGGAGGATATGGCCACAAT
CAAGGTGGTTATGGAGGGTATGGTTACAACCAAGGTGGATATGGAGGATATGAAAATGGTGGCTGGAACTACAACCGGAA
CAGAGGTGGTGGTGGTGGCGGGGGCCGTGGAAGAGGCAACTGGGGATATGGTGGTCCAGGAGGATATGAACGTTCAGGTC
CGGCATATGAACGTGGTGGCAGAGGTGGAGGTAGCCCAGGCGGCAGAGGCTATGCCCGGGGCCGTGGACGAATGGGCGGT
GGCCGTGGGCGAGGCAACCAAAACTATTAGATCGACTTTAGTTGGATGTGCCAGCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12759.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis