Browse Element(s) Details


OsAffx.12789.1.S1_s_at

Description tigr:9631.m00823
TID=OsAffx.12789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to MADS box protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0875411/11SHORT VEGETATIVE PHASE protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g08810Os.14261.1.S1_at11/113+4524423..4527122expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009910biological_processnegative regulation of flower development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12789.1.S1_s_at--818--6151Chr03:4504499..4504523 (25 bp)
GAGGATAGCAATACGGAGGATCGAC
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--941--991Chr03:4504498..4504522 (25 bp)
AGGATAGCAATACGGAGGATCGACA
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--244--6491Chr03:4504496..4504520 (25 bp)
GATAGCAATACGGAGGATCGACAAC
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--237--291Chr03:4504495..4504519 (25 bp)
ATAGCAATACGGAGGATCGACAACC
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--519--10011Chr03:4504494..4504518 (25 bp)
TAGCAATACGGAGGATCGACAACCT
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--1055--1471Chr03:4504493..4504517 (25 bp)
AGCAATACGGAGGATCGACAACCTG
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--348--5191Chr03:4504492..4504516 (25 bp)
GCAATACGGAGGATCGACAACCTGG
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--596--3171Chr03:4504491..4504515 (25 bp)
CAATACGGAGGATCGACAACCTGGC
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--990--3051Chr03:4504490..4504514 (25 bp)
AATACGGAGGATCGACAACCTGGCG
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--651--311Chr03:4504489..4504513 (25 bp)
ATACGGAGGATCGACAACCTGGCGG
LOC_Os03g08754
OsAffx.12789.1.S1_s_at--734--9931Chr03:4504488..4504512 (25 bp)
TACGGAGGATCGACAACCTGGCGGC
LOC_Os03g08754
Target Sequence 
GAGGATAGCAATACGGAGGATCGACAACCTGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12789.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis