Browse Element(s) Details


OsAffx.12816.1.S1_at

Description tigr:9631.m01004
TID=OsAffx.12816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1090011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12816.1.S1_at--651--1771Chr03:5576517..5576541 (25 bp)
ACCGGCGTCAAGGACATTGTCATCG
LOC_Os03g10900
OsAffx.12816.1.S1_at--85--10311Chr03:5576443..5576467 (25 bp)
TTTCCGCCTACCGAAGCTGGACAGG
LOC_Os03g10900
OsAffx.12816.1.S1_at--1128--8911Chr03:5576408..5576432 (25 bp)
TGAGCGTCCGTCACCTCGAGACGAT
LOC_Os03g10900
OsAffx.12816.1.S1_at--804--5991Chr03:5576391..5576415 (25 bp)
GAGACGATCCGATTCCGGCACACGA
LOC_Os03g10900
OsAffx.12816.1.S1_at--1142--8351Chr03:5576336..5576360 (25 bp)
GGCGGATCAACATCCTCAACTGCTT
LOC_Os03g10900
OsAffx.12816.1.S1_at--244--1431Chr03:5576303..5576327 (25 bp)
AGAACGCCAACTGGGTGTTGCACCT
LOC_Os03g10900
OsAffx.12816.1.S1_at--498--8071Chr03:5576269..5576293 (25 bp)
GGAGCATCTGGAGCTACACTACTGC
LOC_Os03g10900
OsAffx.12816.1.S1_at--558--1891Chr03:5576178..5576202 (25 bp)
ACGTTCCCTTGCCTGAAGACTCTGG
LOC_Os03g10900
OsAffx.12816.1.S1_at--847--611Chr03:5576142..5576166 (25 bp)
ATGCGGAGCCTTGCGTGCTTGTGCC
LOC_Os03g10900
OsAffx.12816.1.S1_at--303--1291Chr03:5576084..5576108 (25 bp)
AGATCCTCGAGGTCGGCCAATGTTA
LOC_Os03g10900
OsAffx.12816.1.S1_at--338--4511Chr03:5576032..5576056 (25 bp)
GCCGCTGAAGCTACGGGAGATCCAG
LOC_Os03g10900
Target Sequence 
ACCGGCGTCAAGGACATTGTCATCGACGCCGGCAGCGGCAGCGGCAGCGACTCCGACGACGAGCTGCGTCGATCTTTCCG
CCTACCGAAGCTGGACAGGCTCCGTCTCCTGAGCGTCCGTCACCTCGAGACGATCCGATTCCGGCACACGACGGCAGCCG
CCCATGTCCTCCCGGCGCTCCGGCGGATCAACATCCTCAACTGCTTCCAGCTCAAGAACGCCAACTGGGTGTTGCACCTC
CCGGCGCTGGAGCATCTGGAGCTACACTACTGCCACGACATGGAGGCGATCGTCGACGGTGGCGGCGACACCGCGGCGGA
GGACCGGAGGACGCCGACGACGTTCCCTTGCCTGAAGACTCTGGCGGTGCACGGGATGCGGAGCCTTGCGTGCTTGTGCC
GGGGCGTCCCGGCGATCAGCTTCCCGGCCCTGGAGATCCTCGAGGTCGGCCAATGTTACGCTCTCCGGCGGCTCGACGGC
GTGCGGCCGCTGAAGCTACGGGAGATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis