Browse Element(s) Details


OsAffx.12817.1.S1_at

Description tigr:9631.m01005
TID=OsAffx.12817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1091011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12817.1.S1_at--196--9331Chr03:5588377..5588401 (25 bp)
TCGCCAAGTGCTCCGGCCTGCAGGA
LOC_Os03g10910
OsAffx.12817.1.S1_at--710--951Chr03:5588425..5588449 (25 bp)
AGGACAACGCATGGTGGCGCCTTCC
LOC_Os03g10910
OsAffx.12817.1.S1_at--433--5351Chr03:5588549..5588573 (25 bp)
GAAGATCTCACACTGCAACAGGCTA
LOC_Os03g10910
OsAffx.12817.1.S1_at--1147--8531Chr03:5588617..5588641 (25 bp)
TGGAGCTTCGCCATTGCTCGGAGAT
LOC_Os03g10910
OsAffx.12817.1.S1_at--686--9431Chr03:5588634..5588658 (25 bp)
TCGGAGATGGTTCACGTCGTAGACA
LOC_Os03g10910
OsAffx.12817.1.S1_at--805--1511Chr03:5588677..5588701 (25 bp)
AGCAGCGACGAGAGCACCCGGAGAC
LOC_Os03g10910
OsAffx.12817.1.S1_at--71--6011Chr03:5588686..5588710 (25 bp)
GAGAGCACCCGGAGACGCGCACGTT
LOC_Os03g10910
OsAffx.12817.1.S1_at--1025--8071Chr03:5588738..5588762 (25 bp)
GGAGCTTCCGTCGATGGGCAGCATT
LOC_Os03g10910
OsAffx.12817.1.S1_at--1021--7731Chr03:5588766..5588790 (25 bp)
GGTGGTGCAGCGTTGAGCTTCCCTT
LOC_Os03g10910
OsAffx.12817.1.S1_at--1044--10631Chr03:5588784..5588808 (25 bp)
TTCCCTTGGTTGGAGACCCTGGAGA
LOC_Os03g10910
OsAffx.12817.1.S1_at--746--4591Chr03:5588818..5588842 (25 bp)
GCGACAGCCTCGGAGAGCTACCTGT
LOC_Os03g10910
Target Sequence 
TCGCCAAGTGCTCCGGCCTGCAGGAGCTGGAGGTTGTCGCCGGCGAGGAGGACAACGCATGGTGGCGCCTTCCGGAGCTC
AGGAAGCTCGAGATCGATGAGCTGCACGAGCTGGCGGCCGTGCGGTGGACGCGGACGGACGTCGGGGCGTTCTTGCCGGC
GCTCCGGTGGGTGAAGATCTCACACTGCAACAGGCTAAGGAACGTGAGCTGGGCGGTGCAGCTGCCATGCCTGGAGCAGC
TGGAGCTTCGCCATTGCTCGGAGATGGTTCACGTCGTAGACATTGACGGCGACGACGAGGAGCAGCGACGAGAGCACCCG
GAGACGCGCACGTTCCGCTGCCTCAGGAGGCTGCTGCTGGTGGAGCTTCCGTCGATGGGCAGCATTGGTGGTGGTGCAGC
GTTGAGCTTCCCTTGGTTGGAGACCCTGGAGATCGCCGGCTGCGACAGCCTCGGAGAGCTACCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis