Browse Element(s) Details


OsAffx.12824.1.S1_at

Description tigr:9631.m01046
TID=OsAffx.12824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1131011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11250Os.51567.1.A1_at9/113+5775277..5776063expressed protein
LOC_Os03g11260Os.8108.1.S1_at11/113+5777669..5780261RING zinc finger protein, putative, expressed
LOC_Os03g11270OsAffx.10203.1.S1_x_at1/113+5781097..5782221hypothetical protein
LOC_Os03g11280NANA3+5785498..5785976hypothetical protein
LOC_Os03g11290Os.16810.1.S1_at9/113+5786983..5791825expressed protein
LOC_Os03g11300OsAffx.25053.1.S1_at11/113+5793553..5795613expressed protein
LOC_Os03g11310Os.50947.1.S1_x_at11/113+5796992..5799853expressed protein
LOC_Os03g11310Os.24634.1.A1_s_at11/113+5796992..5799853expressed protein
LOC_Os03g11310OsAffx.12824.1.S1_at11/113+5796992..5799853expressed protein
LOC_Os03g11320Os.5477.1.S2_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11320Os.5477.1.S1_at11/113+5802770..5807225Heparanase-like protein 2 precursor, putative, expressed
LOC_Os03g11330OsAffx.12825.1.S1_s_at11/113+5808129..5813883Glycosyl transferase family 8 protein, expressed
LOC_Os03g11340Os.12674.1.S1_s_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed
LOC_Os03g11340Os.50482.1.S1_at11/113+5819824..5823946leucine-rich repeat resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12824.1.S1_at--86--9811Chr03:5798499..5798523 (25 bp)
TAACCATCTGTACAACATAGCTTTG
LOC_Os03g11310
OsAffx.12824.1.S1_at--615--2511Chr03:5798512..5798536 (25 bp)
AACATAGCTTTGATGTCTTGTGAAA
LOC_Os03g11310
OsAffx.12824.1.S1_at--220--7831Chr03:5798542..5798566 (25 bp)
GGTCAATGGGAACATGGCTTGCAAT
LOC_Os03g11310
OsAffx.12824.1.S1_at--1071--7711Chr03:5798587..5798611 (25 bp)
GGTGGACTTCAAATATCGGCGGTTT
LOC_Os03g11310
OsAffx.12824.1.S1_at--557--491Chr03:5798601..5798625 (25 bp)
ATCGGCGGTTTCATACAATCATGTG
LOC_Os03g11310
OsAffx.12824.1.S1_at--26--7331Chr03:5798630..5798654 (25 bp)
GTGCTTGTGAAGTTGCTAGGATGCC
LOC_Os03g11310
OsAffx.12824.1.S1_at--453--4871Chr03:5798644..5798668 (25 bp)
GCTAGGATGCCAAAAGTTGCTCTGA
LOC_Os03g11310
OsAffx.12824.1.S1_at--412--6671Chr03:5798659..5798683 (25 bp)
GTTGCTCTGAAAGTGTACCGGCGTA
LOC_Os03g11310
OsAffx.12824.1.S1_at--198--1111Chr03:5798670..5798694 (25 bp)
AGTGTACCGGCGTATGACTCATCGA
LOC_Os03g11310
OsAffx.12824.1.S1_at--97--691Chr03:5798683..5798707 (25 bp)
ATGACTCATCGAGGGTGTTCACCAG
LOC_Os03g11310
OsAffx.12824.1.S1_at--600--9671Chr03:5798701..5798725 (25 bp)
TCACCAGACACGTTCACACATTTAT
LOC_Os03g11310
Target Sequence 
TAACCATCTGTACAACATAGCTTTGATGTCTTGTGAAAGACTTGGTCAATGGGAACATGGCTTGCAATTGTTATGGATGA
TGGAAAGAGGTGGACTTCAAATATCGGCGGTTTCATACAATCATGTGATAGGTGCTTGTGAAGTTGCTAGGATGCCAAAA
GTTGCTCTGAAAGTGTACCGGCGTATGACTCATCGAGGGTGTTCACCAGACACGTTCACACATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis