Browse Element(s) Details


OsAffx.12832.1.S1_at

Description tigr:9631.m01125
TID=OsAffx.12832.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1204011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12832.1.S1_at--710--9311Chr03:6298325..6298349 (25 bp)
TCCCTAACGGTGACCGACCACAGAG
LOC_Os03g12040
OsAffx.12832.1.S1_at--428--9811Chr03:6298321..6298345 (25 bp)
TAACGGTGACCGACCACAGAGCCAC
LOC_Os03g12040
OsAffx.12832.1.S1_at--583--7371Chr03:6298316..6298340 (25 bp)
GTGACCGACCACAGAGCCACAGCTG
LOC_Os03g12040
OsAffx.12832.1.S1_at--952--5851Chr03:6298310..6298334 (25 bp)
GACCACAGAGCCACAGCTGCTGCGT
LOC_Os03g12040
OsAffx.12832.1.S1_at--98--2151Chr03:6298306..6298330 (25 bp)
ACAGAGCCACAGCTGCTGCGTGCGT
LOC_Os03g12040
OsAffx.12832.1.S1_at--1098--1371Chr03:6298304..6298328 (25 bp)
AGAGCCACAGCTGCTGCGTGCGTCG
LOC_Os03g12040
OsAffx.12832.1.S1_at--928--2151Chr03:6298298..6298322 (25 bp)
ACAGCTGCTGCGTGCGTCGTCATCT
LOC_Os03g12040
OsAffx.12832.1.S1_at--595--3391Chr03:6298297..6298321 (25 bp)
CAGCTGCTGCGTGCGTCGTCATCTG
LOC_Os03g12040
OsAffx.12832.1.S1_at--164--4031Chr03:6298281..6298305 (25 bp)
CGTCATCTGGCCGACGAGATCGACG
LOC_Os03g12040
OsAffx.12832.1.S1_at--285--4091Chr03:6298261..6298285 (25 bp)
CGACGCGACGATGAACACGGAGGAT
LOC_Os03g12040
OsAffx.12832.1.S1_at--853--4051Chr03:6298253..6298277 (25 bp)
CGATGAACACGGAGGATGGCGCCGG
LOC_Os03g12040
Target Sequence 
TCCCTAACGGTGACCGACCACAGAGCCACAGCTGCTGCGTGCGTCGTCATCTGGCCGACGAGATCGACGCGACGATGAAC
ACGGAGGATGGCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis