Browse Element(s) Details


OsAffx.12848.1.S1_x_at

Description tigr:9631.m01332
TID=OsAffx.12848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin interaction motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1397011/11Ubiquitin interaction motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13930OsAffx.3233.1.S1_at11/113+7538631..7540973subtilisin proteinase, putative, expressed
LOC_Os03g13940NANA3+7542916..7543564transposon protein, putative, unclassified
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0001653molecular_functionpeptide receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12848.1.S1_x_at--281--6951Chr03:7561446..7561470 (25 bp)
GTAGATCCAGAATTGGCACTCGCCC
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--678--4151Chr03:7561426..7561450 (25 bp)
CGCCCTGCGGTTGTCCATGGAAGAA
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--383--3091Chr03:7561341..7561365 (25 bp)
AATAAGGACCATGCCTCAAGCTCAA
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--529--2631Chr03:7561289..7561313 (25 bp)
AACCTGCCTCAAATGCTGCTGATGA
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--121--711Chr03:7560344..7560368 (25 bp)
ATGATGCTCAGCTACTACAACAGGC
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--567--9851Chr03:7560329..7560353 (25 bp)
TACAACAGGCTCTTGCAATGTCAAT
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--540--6311Chr03:7560249..7560270 (22 bp)
GATGACCAGGACTTGGCACTAGCTC
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--839--3711Chr03:7559991..7560013 (23 bp)
CTAGCTCTTCAAATGTCTGTCCAGG
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--456--5011Chr03:7559964..7559988 (25 bp)
GCAGGCGGGTCTAGTCAGTCTGATA
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--742--671Chr03:7559777..7559801 (25 bp)
ATGACCCCTCTGTGAAAGATTTGCT
LOC_Os03g13970
OsAffx.12848.1.S1_x_at--618--6511Chr03:7559760..7559784 (25 bp)
GATTTGCTGGCATCATTGCATGGGC
LOC_Os03g13970
Target Sequence 
GTAGATCCAGAATTGGCACTCGCCCTGCGGTTGTCCATGGAAGAAGAGCGAGCAAGGCAAGAGGCTATTGCGAAGAAGGC
CGCAGAAGAATCTTCTGGTGCTGAAAATAAGGACCATGCCTCAAGCTCAAACGCTGATTCTGTTATGGCAGAAGCGGAAC
CTGCCTCAAATGCTGCTGATGATAAAAAAGATCAGCCGAAGGAAGATGATGATGCTCAGCTACTACAACAGGCTCTTGCA
ATGTCAATGGAGGAGGGTTCTTCAGGGGCTGCAGCGGCTGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTT
GGCACTAGCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAGCAAGGTGTTTGAAGACAGAT
CATTTGTTACATCCATCCTTAACTCTCTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTG
CATGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12848.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis